PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G190800.1
Common NamePOPTR_0008s19510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 269aa    MW: 30289.7 Da    PI: 6.8605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G190800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.9e-11151198455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  Potri.008G190800.1 151 SHSLAERARREKISERMKILQDIVPGC----NKVTGKALVLDEIINYIQSLQ 198
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.28E-11145202No hitNo description
SuperFamilySSF474591.18E-17145214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.821147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-18147215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-11153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MIRMDPPAMM NEGGPYTLEE IWQFPINGSG RGQFELLNLE RRAAASARKR REVDLDVDDS  60
SSSKPTTLSP TNANTNTNGL LNDCDGKRLK AWGSRDDNHH HQQQQQQQQH DSRSEAEPSS  120
GKLVEHKPQP PEPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL QDIVPGCNKV  180
TGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNLNMNPETE VFPSKDFGQH TFDTAGMAFG  240
SQATREYNHC TSPEWLHMQV GGGFQRTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.85621e-125leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G190800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311780.10.0transcription factor BHLH094 isoform X1
SwissprotQ69WS35e-71BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A385JI830.0A0A385JI83_POPTO; Big petal
TrEMBLB9HLU00.0B9HLU0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s19510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-75BIG PETAL P