PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G189600.1
Common NamePOPTR_0008s19390g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 423aa    MW: 47351 Da    PI: 7.9359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G189600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-11234276754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           Er+RR ri+++++ Lr l+Pk +      K++Ka+iL  A++Y+ +L
  Potri.008G189600.1 234 VTERNRRTRIKTGLFALRALVPKiS------KMDKAAILGDAIDYVGEL 276
                         67*********************66......**************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-73598IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.33E-9225281No hitNo description
SuperFamilySSF474595.63E-15226290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.449227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14229294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-9234276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.2E-5344413No hitNo description
SuperFamilySSF550213.09E-5345410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MRGLDRAMER LRPLVDSNAW DYCVVWKLGD DPSRIHGEVV ISAEPRWLCH ATVTTHDSNT  60
LREVAGTQVL IPVIGGLVEL FAAKHMKKDE KMIESIRAHC HVPVKQEAVT ELGYSNSSFN  120
DHRLDSLLEE NLPHSCHLLS LIPRTQFLLP LSQPRNSISF EGSSSGSNPS NEAPSFVSNA  180
SQLPQHGHLE LSVGKSNHDE KILKQRAGSA DCNKKVPKVM RRSERDDYKS KNLVTERNRR  240
TRIKTGLFAL RALVPKISKM DKAAILGDAI DYVGELLKEV KNLQDEIKNA EEEERRASNI  300
ELKTSKLEIF QEDHVSSSKI NQDSSGFVEK KGAEVQLEVD QISKRQFLLK FLCEQRQGGF  360
GRLMETIHSL GLQILDANIT TFNGNVLNIL KVEADKDIHP KTLKKSLIEL TGNLIQTFGS  420
QI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G189600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380014.10.0transcription factor bHLH90
TrEMBLA0A3N7FFE60.0A0A3N7FFE6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s19390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.16e-34bHLH family protein