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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G181000.1 | ||||||||
Common Name | POPTR_0008s18130g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 644aa MW: 72475.2 Da PI: 5.8973 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 24.6 | 5.5e-08 | 249 | 273 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+ +LH++Fv+av+q+G Potri.008G181000.1 249 KARVVWSVDLHQKFVKAVNQIGFDT 273 68*******************7554 PP | |||||||
2 | G2-like | 38.1 | 3.3e-12 | 293 | 320 | 28 | 55 |
G2-like 28 tPktilelmkvkgLtlehvkSHLQkYRl 55 Pk+il++m+v+ Lt+e+v+SHLQkYRl Potri.008G181000.1 293 GPKKILDMMNVPWLTRENVASHLQKYRL 320 5**************************8 PP | |||||||
3 | Response_reg | 49 | 3.3e-17 | 21 | 95 | 1 | 75 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii 75 vl+vdD+p+ +++l+++l+k y ev+++ +++al+ll+e++ +D+++ D+ mp+mdG++ll++ e +lp+i Potri.008G181000.1 21 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKggYDIVISDVYMPDMDGFKLLEQVGLEM-DLPVI 95 89*********************.***************999999*******************9984433.56665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 9.82E-21 | 18 | 95 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.8E-40 | 18 | 95 | No hit | No description |
SMART | SM00448 | 1.3E-21 | 19 | 179 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 36.372 | 20 | 183 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.1E-13 | 21 | 95 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.97E-22 | 22 | 183 | No hit | No description |
SuperFamily | SSF52172 | 6.69E-7 | 142 | 198 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.8E-40 | 144 | 198 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-25 | 247 | 325 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-13 | 247 | 324 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-6 | 251 | 319 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.5E-10 | 292 | 320 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MMENNGFSSP RNDSFPAGLR VLVVDDDPTW LKILEKMLKK CSYEVTTCGL ARDALNLLRE 60 RKGGYDIVIS DVYMPDMDGF KLLEQVGLEM DLPVISRFFS LTLEFYFNAN IFYLRIHIPM 120 SCLHYIYIGI LIQLLTSCAC QLTVMSVDGE TSRVMKGVQH GACDYLLKPI RMKELRNIWQ 180 HVFRKKIHEV RDIETLERVE SFQMTRNGSD QYEDGHVLCG EDLTSIKKRK HIESKHDEKD 240 TGDSISTKKA RVVWSVDLHQ KFVKAVNQIG FDTTSLPSFD GAMTGSVCLA EVGPKKILDM 300 MNVPWLTREN VASHLQKYRL YLSRLQKEND FKNPAGGIKQ SDSPLRDSAG SFGSQNSINL 360 QHNDVSNGSY RFSGSSLVVH NGDPRSHDSD RKRLVSTPVE EPKRTLTVNV PNPCIPRSSQ 420 MEFGHPLAPP QSEVDFGALD STFPTKYPWC GIPEIQLKKE HNPLHLNDEF SHLPLPGQKQ 480 LTQADYPQPA PAISSAPSLT PSHNEYRSNV NHASSTAIAV DSSPIQTKTN VANHQAIELI 540 SKSTPSLENQ GFNMNSITEF ESSRKNINLG MLPFTTLEED LQVCWVPGDC YMNLGLQNIE 600 VLEYFDPGLI TDVPVNLNDG LRFDYEFNDP TEYSLIDQSL FIA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G181000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908145 | 0.0 | FN908145.1 Populus x canadensis mRNA for putative B-type response regulator 14 (rr14 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463381.1 | 0.0 | two-component response regulator ARR11 isoform X1 | ||||
TrEMBL | A0A2K1ZJ94 | 0.0 | A0A2K1ZJ94_POPTR; Two-component response regulator | ||||
STRING | POPTR_0008s18130.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-118 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G181000.1 |
Entrez Gene | 7494797 |