PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 249aa MW: 28302.9 Da PI: 6.7064

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G180800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.6e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+ eEd++l + + G ++W+ +++ g+ R++k+c++rw +yl Potri.008G180800.1 14 RGTWSVEEDQKLMNFILSNGIKCWRHVPKLAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53.3	6.4e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E++ lv+++ +lG++ W++Ia+ ++ gRt++++k++w++ Potri.008G180800.1 67 RGAFSEAEEDHLVELHSRLGNR-WSKIAAFFP-GRTDNEIKNHWNT 110 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-20	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.926	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.38E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-12	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.11E-7	16	61	No hit	No description
PROSITE profile	PS51294	25.527	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-15	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	6.77E-10	69	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGRRPCCDKV GLKRGTWSVE EDQKLMNFIL SNGIKCWRHV PKLAGLLRCG KSCRLRWMNY 60 LRPDLKRGAF SEAEEDHLVE LHSRLGNRWS KIAAFFPGRT DNEIKNHWNT RIKKRLKLLG 120 VDPQGHEPPI EQAETNCDAK ESTFAAMKEV VGNINVDQKL LENPVSKVET RLDHDHSCSG 180 HNTSKALRED SDAGWSTFPS LTDLQSDSCL SRSMDEYVVQ ESSSESYWID TYVDSLLSWD 240 GLSFSNLE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-27	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G180800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002311737.3	0.0	myb-related protein 315
Swissprot	P81394	1e-68	MYB15_ANTMA; Myb-related protein 315
TrEMBL	A0A2K1ZJ86	0.0	A0A2K1ZJ86_POPTR; Uncharacterized protein
TrEMBL	A0A3N7FF86	0.0	A0A3N7FF86_POPTR; Uncharacterized protein
STRING	POPTR_0008s18110.1	1e-108	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28123	3	3
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	3e-76	myb domain protein 40

Link Out ? help Back to Top
Phytozome	Potri.008G180800.1

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]