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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.008G163900.1 |
Common Name | POPTR_0008s16390g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
C2H2 |
Protein Properties |
Length: 216aa MW: 23996.9 Da PI: 9.4021 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.008G163900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.5 | 5e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C++ F++ L H+++H
Potri.008G163900.1 57 YTCTFCKREFKSAQALGGHMNVH 79
9********************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0008361 | Biological Process | regulation of cell size |
GO:0009755 | Biological Process | hormone-mediated signaling pathway |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0010160 | Biological Process | formation of organ boundary |
GO:0042127 | Biological Process | regulation of cell proliferation |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MERNSLSSNV NGHSNIGSRA CNNNDKKKKL RDSWNFSSCQ SNGHDYLGGL SWPPRSYTCT 60 FCKREFKSAQ ALGGHMNVHR RDRARLRLSP PRDDQCPILT LNLNPNPSFC TPFNRTIPSL 120 VSPPLTAPST PSLASEVKKW TIGGGNPLDP SSPNLSDLTT NRSRKSFFEN FDGFTRQDGF 180 KIWNKGEIVR LDLDIGLVSD SKDDLDLELR LGSLN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX987301 | 0.0 | JX987301.1 Populus tomentosa isolate PtoSUP2 superman gene, complete cds. |