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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.008G157600.1 |
Common Name | POPTR_0008s15740g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
HSF |
Protein Properties |
Length: 349aa MW: 40084 Da PI: 4.8958 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.008G157600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 117.3 | 9.2e-37 | 21 | 112 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+y+i+ed+++++++sws+ +nsf+++d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkk+
Potri.008G157600.1 21 FLTKTYDIIEDASTNHIVSWSRGNNSFIIWDPQAFSTSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKH 102
9****************************************************************999.........************** PP
XXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkks 102
ll++i+r+k
Potri.008G157600.1 103 LLKSIRRRKA 112
*******986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MASTAIPQPM EGLRDSVPPP FLTKTYDIIE DASTNHIVSW SRGNNSFIIW DPQAFSTSLL 60 PRYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGK KHLLKSIRRR KAPQTLTSQA 120 CVEVGTFGLD GEVNRLRRDK QVLMVELVKL RQQQQTTKAC IQLIERKLKR TENKQQQMMS 180 FLARAMQNPN FVQQLAQQKE MRKELEEAIS KKRRRPIDQG RSNFEVAEFG HGEGVGTFVK 240 IEHQEFGDLS EFDDLSEFDV PEFHNPAMNM QGLSENQLIN LVEERIEKGE EHGNKGNEID 300 EGFWEDLLNE DIIDEEIAVL GSEGEDEEDV SVLVEQLGYL GSSTELRT*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 3e-23 | 19 | 110 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-23 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-23 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-23 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
5hdg_A | 3e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-23 | 19 | 110 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP013986 | 0.0 | KP013986.1 Populus simonii heat shock transcription factor A6b2 (HsfA6b2) mRNA, complete cds. |