PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G156100.1
Common NamePOPTR_0008s15590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 759aa    MW: 83433.4 Da    PI: 6.8279
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G156100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93e-16464502240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  Potri.008G156100.1 464 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCFNKP 502
                         589**********************************96 PP
2TCR505.7e-16549587139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Potri.008G156100.1 549 RHKRGCNCKKSSCLKKYCECYQGGVGCSLNCRCEGCKNA 587
                         589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-18463504IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.259464589IPR005172CRC domain
PfamPF036381.1E-11466501IPR005172CRC domain
SMARTSM011144.4E-17549590IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11551587IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MDTPEKTQVT SPLSKFEDSP VFNYINSLSP IKPVKSINIA HTFHSLSFAS LPSVFTSPHV  60
NSHKETRFLK RHNYADLSKP EFSSENGNEA CNDEGVAVDA AQLYDNSSEL QESFDPGVSI  120
REASVEPPSE HSKLAIELPR TLKYDCGIPD SDQTPRCGTQ TDTVSKSDGT IASLVPFTNV  180
ASHKDSPEGQ VHLAGLYKIE SKKEATECDW ENFISDSADL LIFNSPIDAE GFKELFQKSP  240
NPVVGFCTSF SEVQKMQIVN PIGPGEQNEK EDPFTQPGET IELTQMDPTQ DNLAANKDPN  300
KYIISNPSKA VSNLHRGMRR RCLDFEMVGA RRKNVEDGSS TSSVVVQSDE KITYKNTQLV  360
PFKPSSDSSR CILPGIGLHL NALAINSRDS KKIKHETFSS SITLPGSAAS FHSPTSGQEL  420
DESLALASTE RDRDPNDNVV PFVEDFSQTS PKKKRRRLEG EAEACKRCNC KKSKCLKLYC  480
ECFAAGVYCI EPCACQDCFN KPIHEDTVLA TRKQIESRNP LAFAPKVIRS SEPAPEIGDE  540
SSKTPASARH KRGCNCKKSS CLKKYCECYQ GGVGCSLNCR CEGCKNAFGR KDGSALVEME  600
DEPEDETEAS EKNGVDKTVQ KAEIQNNDEQ HPNSALPTTP LRFSRPLVQL PFSSKGKPPR  660
CFLGVGSSSG LYTGQRYGKP NILRPQWKFE KQFQNVSGDE IPEMLRENHS PSSGIKTSPN  720
SKRVSPPQSN LGSSPGRRSG RKLILQSIPS FPSLTPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1746858614120Protein lin-54 homolog
5fd3_B4e-1746858614120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450457PKKKRRRL
2451456KKKRRR
3453457KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G156100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175860.0AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462660.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2K1ZHX50.0A0A2K1ZHX5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s15590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-177TESMIN/TSO1-like CXC 2