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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.008G149100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
Whirly |
| Protein Properties |
Length: 307aa MW: 33718.1 Da PI: 9.7559 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.008G149100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 206.8 | 2.4e-64 | 129 | 267 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91
s+yk+kaal+v+++ p+f+ ldsg+ kl ++G++ll++a+a+++r+ydW +kq+f+ls+te+++lv+l +k+sceffhdp +++s+eGkvr
Potri.008G149100.1 129 SIYKGKAALTVEPRSPEFSPLDSGAYKLVKEGFVLLQFAPAASVRQYDWTRKQVFSLSVTEIGHLVSLDAKGSCEFFHDPNKGKSDEGKVR 219
7****************************************************************************************** PP
Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
k lkvePlpdGsG+f+nlsv+n++++ +e++++Pv+kae++vl s+++
Potri.008G149100.1 220 KLLKVEPLPDGSGHFFNLSVQNKVLNIDENIYIPVTKAEYTVLTSAFN 267
********************************************9996 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0042162 | Molecular Function | telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MGMGSWPMDG SINLSVSILD LSSPSSLSVS GSTKKREERG KMLQLNSVSR VSSSPQNPKL 60
WLPQYNSLCS TKSISLNSKT SSTEKKKTLG VKCQYYDQQH KTFTTSSRSS PSSAPPVGES 120
PPKVFVGHSI YKGKAALTVE PRSPEFSPLD SGAYKLVKEG FVLLQFAPAA SVRQYDWTRK 180
QVFSLSVTEI GHLVSLDAKG SCEFFHDPNK GKSDEGKVRK LLKVEPLPDG SGHFFNLSVQ 240
NKVLNIDENI YIPVTKAEYT VLTSAFNYIL PYLLGWHAYA NSIKPDDSSR GNNASPRYGG 300
DYEWSR*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 1e-112 | 118 | 305 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 1e-112 | 118 | 305 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 1e-112 | 118 | 305 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 1e-112 | 118 | 305 | 32 | 219 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
