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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.008G142400.1 |
Common Name | POPTR_0008s14180g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
C2H2 |
Protein Properties |
Length: 610aa MW: 66543.2 Da PI: 9.2491 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.008G142400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ C+k F r nL+ H r H
Potri.008G142400.1 69 FICEVCNKGFQREQNLQLHRRGH 91
89*******************88 PP
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2 | zf-C2H2 | 13.1 | 0.00029 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Potri.008G142400.1 145 WKCEKCSKRYAVQSDWKAHSKTC 167
58*****************9998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 610 aa
Download sequence Send
to blast |
MAASSSVPFF GIREEDQNQM KQQHSSTPTS SSAQAPPPPK KKRNQPGTPN PDAEVIALSP 60 KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK TTKEVRRKVY LCPEPTCVHH 120 DPSRALGDLT GIKKHYSRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYRCDCGTLF 180 SRRDSFITHR AFCDALAQES ARNPPPNLNT IGSHLYGSSN MTLGLSRVGT QISSLQDHSN 240 QSTDVLRFGG GVRTGQFDHL LPPSIGSSSF RPPQQMPSSA FFMQETSQNY HDENQSQQEL 300 LQNKPFHHGL MQFADIHNNT SNPPSAGNLF NLSFLSNSST TNSNNANNSN SNLPTSGLLI 360 SDHFNNQNGV GGGSEGTNNF SNNVRGNQMT SGVPSLFSSS VQNDNMVSHM SATALLQKAA 420 QMGSTSSNNS ASLLRSFGSS SSSGTKSDRA LVGGNFGGML SDNENNLHEL MNSFTPGNPS 480 IFGSGHAQEN PYGGYTANRT SLEQEKQHHG PNFGNINMDE AKLHQGLNAS NIGGSDRLTR 540 DFLGVGPQIV RSMSGSSGFS QREKQQQQQL QHQHHGMDMG DSSLDLERHN TNISAAPTSQ 600 SFGGNGSFQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC208494 | 0.0 | AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence. |