PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G120400.2
Common NamePOPTR_0008s11930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 415aa    MW: 45850.5 Da    PI: 5.4118
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G120400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.29.3e-101659340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Potri.008G120400.2 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
                        578*****************************667888888876 PP
2CCT682.5e-23366409144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Potri.008G120400.2 366 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 409
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9781461IPR000315B-box-type zinc finger
SMARTSM003366.7E-111461IPR000315B-box-type zinc finger
PfamPF006438.7E-81659IPR000315B-box-type zinc finger
CDDcd000214.47E-101761No hitNo description
PROSITE profilePS5101716.083366408IPR010402CCT domain
PfamPF062035.5E-18366408IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MICIKSSANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASLKSLD LCSKENSVPS WHGGFTRKAR TPRHGKPVSQ SKIAETIRNI PIPLVPEVGS  120
DEISHEDNEE EHLLYRVPIF DPFVADLCAS TTISNEAGAI VPAGGNDGTD QRVADSNGSL  180
PGFLPSDMDL AEFAADMESL LGRGLENESF GMEELGLMDC KEEKEFEVKG FPLWNGKVKV  240
EDEENASTDM AKDPIFELSF DYNSSATCGE EDEKVGIEEG DLKNTRGEYE DDDGAKRKIL  300
LSLDYEAVMT AWASQGSPWT NGNRPDFDPD ECWPDCMGIC GAQLHHPYGD MISGLGAHPA  360
MVDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTT LAGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376392RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.1310.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G120400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470810.0EF147081.1 Populus trichocarpa clone WS01227_E03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311458.20.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA9PFG30.0A9PFG3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11930.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-107B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]