PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CO-like

Protein Properties

Length: 445aa MW: 49263.5 Da PI: 5.5873

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G120400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.1	1e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v Potri.008G120400.1 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59 578*****************************667888888876 PP
2	CCT	67.9	2.7e-23	396	439	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Potri.008G120400.1 396 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 439 9*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.978	14	61	IPR000315	B-box-type zinc finger
SMART	SM00336	6.7E-11	14	61	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.5E-8	16	59	IPR000315	B-box-type zinc finger
CDD	cd00021	5.15E-10	17	61	No hit	No description
Pfam	PF06203	6.0E-18	396	438	IPR010402	CCT domain
PROSITE profile	PS51017	16.083	396	438	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0016020	Cellular Component	membrane
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MICIKSSANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR 60 LKTASLKSLD LCSKENSVPS WHGGFTRKAR TPRHGKPVSQ SKIAETIRNI PIPLVPEVGS 120 DEISHEDNEE EHLLYRVPIF DPFVADLCAS TTISNEAGAI VPAGGNDGTD QRVADSNGVE 180 SKILIGAIER RDVESLPGFL PSDMDLAEFA ADMESLLGRG LENESFGMEE LGLMDCKEEK 240 EFEVKGFPLW NGKVKVEDEE NASVERKAVR KCYAGIETDM AKDPIFELSF DYNSSATCGE 300 EDEKVGIEEG DLKNTRGEYE DDDGAKRKIL LSLDYEAVMT AWASQGSPWT NGNRPDFDPD 360 ECWPDCMGIC GAQLHHPYGD MISGLGAHPA MVDGGREARV SRYREKRRTR LFSKKIRYEV 420 RKLNAEKRPR MKGRFVKRTT LAGK*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MICIKSSANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASLKSLD LCSKENSVPS WHGGFTRKAR TPRHGKPVSQ SKIAETIRNI PIPLVPEVGS  120
DEISHEDNEE EHLLYRVPIF DPFVADLCAS TTISNEAGAI VPAGGNDGTD QRVADSNGVE  180
SKILIGAIER RDVESLPGFL PSDMDLAEFA ADMESLLGRG LENESFGMEE LGLMDCKEEK  240
EFEVKGFPLW NGKVKVEDEE NASVERKAVR KCYAGIETDM AKDPIFELSF DYNSSATCGE  300
EDEKVGIEEG DLKNTRGEYE DDDGAKRKIL LSLDYEAVMT AWASQGSPWT NGNRPDFDPD  360
ECWPDCMGIC GAQLHHPYGD MISGLGAHPA MVDGGREARV SRYREKRRTR LFSKKIRYEV  420
RKLNAEKRPR MKGRFVKRTT LAGK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	406	422	RRTRLFSKKIRYEVRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.131	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G120400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147081	0.0	EF147081.1 Populus trichocarpa clone WS01227_E03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002311458.2	0.0	zinc finger protein CONSTANS-LIKE 16
TrEMBL	A9PFG3	0.0	A9PFG3_POPTR; Uncharacterized protein
STRING	POPTR_0008s11930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1473	33	92
Representative plant	OGRP802	16	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-105	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Potri.008G120400.1
Entrez Gene	7483952

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]