PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G120100.1 | ||||||||
Common Name | POPTR_0008s11900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 311aa MW: 34202 Da PI: 4.4126 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.3e-16 | 89 | 137 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 + GVr++k +g+W+AeIr p++ + r +lg+f t eeAa+a++a ++++e Potri.008G120100.1 89 KPVGVRQRK-WGKWAAEIRNPVT---KVRTWLGTFNTLEEAAQAYEAKKQEYE 137 789*****9.**********654...5***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.18E-19 | 88 | 131 | No hit | No description |
SMART | SM00380 | 4.7E-12 | 89 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-11 | 89 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.187 | 89 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-7 | 90 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-15 | 91 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-19 | 92 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-7 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MRKIRVICND PYATETDSSD DESDKRSLKK RFVREINIPL AVSPQPKALE PESSCQDSNN 60 SAKPPSKRRR VLPKTPTSTT EEKKLAPKKP VGVRQRKWGK WAAEIRNPVT KVRTWLGTFN 120 TLEEAAQAYE AKKQEYEALA LTMAASEKSQ IMSSSAGVLQ SHSHSSSKNE GSSASDETDD 180 SVVSHTSPAS VLELDTSVVS NVTGDCGLLI KDEDICASVA DLDIPDLAFM TDPLASCPFD 240 HDLNLGQEVG NLIDEFGRFY DDYCGIVDLD ICGLNSDEPS DLPDYDFEFG NEEFSYLDDH 300 QQKPLNIACL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 70 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G120100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX275831 | 0.0 | JX275831.1 Populus deltoides isolate Q18 ERF mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311456.1 | 0.0 | ethylene-responsive transcription factor ERF119 | ||||
Refseq | XP_024463363.1 | 0.0 | ethylene-responsive transcription factor ERF119 | ||||
TrEMBL | B9HJ24 | 0.0 | B9HJ24_POPTR; ERF family protein | ||||
STRING | POPTR_0008s11900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25890.2 | 2e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G120100.1 |
Entrez Gene | 7483950 |