PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G113200.1
Common NamePOPTR_0008s11240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 573aa    MW: 61435.8 Da    PI: 5.549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G113200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09383431355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Potri.008G113200.1 383 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 431
                         58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-17378448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.40E-11378435No hitNo description
PROSITE profilePS5088815.485380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16381447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6383431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10386436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MDMSDKDKFE LEESNDNPIN YRSPGGMSLD RRFNSTSIPN SSLGLVPTDN QMSVCRGDLA  60
EAVAASCSSA SVIDSFGPAM WEHPTNSQNL VFCDINVQNI ASSSNTAGIG KGFPASLRNG  120
IDRTLEMGWN PPNPMLKGGN FLPNASGMLP QSLSQFPADS AFIERAARFS CFNGGNFSDM  180
GNPFGVPESM GIFSRGGGMM QGPGEVFMGS GMKSVSGGRA PKNVMNAVEA SKDVSMSVNH  240
MATEGSPLKN ETKSESLARS RDEAKQGMGG SGNDSDEAEF SGGGGQDEPS MLEGNCRELS  300
AKSLGSNKRK RNGQDAELDQ AKGTPQSAEP AKGSPETQQK GDQKPTSTTS KDAGKQGKQG  360
SLGSDQPKEE YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML  420
DEIINYVQSL QRQVEFLSMK LATVNPRLDL NIEGLLAKDV FDPKILQLHA VPPSSLAFSL  480
EMPMAYPPSH PSQAGLIPTA FPGMNNHSDI ICRTINSQLT PMTAGFKEPA QLPNVWDDEL  540
RNVVQMSYET SAPHDSQDVN KPLPPGHLKV EL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.155160.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G113200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468110.0EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463643.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A2K1ZFJ70.0A0A2K1ZFJ7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-131bHLH family protein