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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G112000.8 | ||||||||
Common Name | POPTR_0008s11120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 293aa MW: 32243.2 Da PI: 6.8596 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.9 | 2.8e-16 | 14 | 63 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Potri.008G112000.8 14 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQHLQ 63 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-22 | 10 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-19 | 10 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.082 | 12 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-13 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.20E-15 | 14 | 67 | No hit | No description |
SMART | SM00353 | 3.0E-12 | 18 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MSDGKNSDRA NAIRSKHSVT EQRRRSKINE RFQILRDLIP HSDQKRDTAS FLLEVIEYVQ 60 HLQEKVQKYE GPYQGWSPEP AKLMPWRNSH WRLQSSVGHP QAIKNGYVPG ETFPGKLDEN 120 NIALTPAMLP STPNLVESDH VACKVLEHQP ELGNKAMPLP TPAPIRSVGL VAHPCQLPVS 180 DAQSAECPIT SEMLNQQELA IEAGTINISS VYSQELLNTL TQSLQSAGVD LSQANISVQI 240 DLGKRANRGL TSGTLTSKDP QNPHPTNEMI THLRDASGGE DSDQAQKRLK TS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.9776 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G112000.8 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312362.2 | 0.0 | transcription factor BIM2 isoform X1 | ||||
Refseq | XP_024462940.1 | 0.0 | transcription factor BIM2 isoform X1 | ||||
Swissprot | Q9CAA4 | 3e-99 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | B9HIU8 | 0.0 | B9HIU8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11120.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-101 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G112000.8 |
Entrez Gene | 7483907 |
Publications ? help Back to Top | |||
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