PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G107900.2
Common NamePOPTR_0008s10730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 846aa    MW: 95487.3 Da    PI: 7.8694
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G107900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.82.5e-50301463118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwl+++ei+a+L n++ +++  ++ + p sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++ p
  Potri.008G107900.2  30 EEsRTRWLRPNEIHAMLCNHKYFTINVKPVKLPMSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDIP 120
                         4459*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         tf rrcywlL+++le++vlvhy+e++
  Potri.008G107900.2 121 TFVRRCYWLLDKTLEHVVLVHYRETQ 146
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.09425151IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-7228146IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4432144IPR005559CG-1 DNA-binding domain
PfamPF018331.0E-6303389IPR002909IPT domain
SuperFamilySSF812961.96E-14304390IPR014756Immunoglobulin E-set
PfamPF127969.2E-7488568IPR020683Ankyrin repeat-containing domain
CDDcd002045.16E-15488598No hitNo description
Gene3DG3DSA:1.25.40.202.9E-15489601IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.34E-16489601IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.875506571IPR020683Ankyrin repeat-containing domain
SMARTSM002486.1E-6539568IPR002110Ankyrin repeat
PROSITE profilePS5008811.327539571IPR002110Ankyrin repeat
SuperFamilySSF525404.25E-5697774IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001599702724IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0026725747IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.853726750IPR000048IQ motif, EF-hand binding site
PfamPF006120.002727747IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-5805832IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001519805827IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078807835IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MESGFSDRLV GSEIHGFHTL RDLDVPNIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVK  60
LPMSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDIP  120
TFVRRCYWLL DKTLEHVVLV HYRETQEVGS FSVSDQSAPG LLSEESDSGA ARPSDSLTVI  180
NHAIRLHELN TLEWDELLTN DPGNSILHGG DNVYRQLTGS QVYLDAQRKN SVVLGARDSL  240
DILINDGLQS QDSFGRWMNS IIDDSPVSVD DATVESPISS GYDSFASPGM DQHQSSIQEQ  300
MFIITDFSPA WGFSNETTKI LVTGYFHEQY LHLAKSNLFC ICGDAFVPAE IVQAGVYSCM  360
VSPHSPGLVN LCLSLDGSKP ISQILNFEYR APSVHDSVVF SEDKSKWEEF HLQMRLAYLL  420
FSTSKTLNVL SSKVSPAKLK EAKKFAHKTS NISNSWAYLI KSIEDSRISV AQAKDGLFEL  480
SLKNTIKEWL LERVLEGCKT TEYDAQGLGV IHLCAIIGYT WAVYLFSWSG LSLDFRDKHG  540
WTAMHWAAYY GREKMVAALL SAGAKPNLVT DPTKENPGGC TAADLASAKG YDGLAAYLSE  600
KALVAQFESM IIAGNASGSL QMTATDTVNS ENLSEEELHL KDTLAAYRTA ADAAARIQTA  660
FREHSLKVYT KAVQFSSPED EARNIIAAMK IQHAFRNYDS KKKIAAAAHI QHRFHTWKTR  720
KNFLNMRRQA IKIQAAFRGF QERRQYRKII WSIGVLEKAI LRWRLKRKGF RGLQVEPVET  780
DVDPKHESDT EEDFYKISQK QAGERVERSV IRVQAMFRSK QAQEQYRRMK LTYNQATVGD  840
LPGSC*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G107900.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2081390.0AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462499.10.0calmodulin-binding transcription activator 5 isoform X3
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A3N7FIW00.0A0A3N7FIW0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]