PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G107900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 908aa    MW: 102195 Da    PI: 7.1744
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G107900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.72.8e-50301463118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwl+++ei+a+L n++ +++  ++ + p sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++ p
  Potri.008G107900.1  30 EEsRTRWLRPNEIHAMLCNHKYFTINVKPVKLPMSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDIP 120
                         4459*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         tf rrcywlL+++le++vlvhy+e++
  Potri.008G107900.1 121 TFVRRCYWLLDKTLEHVVLVHYRETQ 146
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.09425151IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-7228146IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-4432144IPR005559CG-1 DNA-binding domain
PfamPF018331.1E-6357443IPR002909IPT domain
SuperFamilySSF812962.1E-14358444IPR014756Immunoglobulin E-set
CDDcd002044.72E-15542652No hitNo description
PfamPF127961.0E-6542622IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.48E-16543655IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.3E-15543655IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.875560625IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.327593625IPR002110Ankyrin repeat
SMARTSM002486.1E-6593622IPR002110Ankyrin repeat
SuperFamilySSF525405.13E-5751828IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001599756778IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0026779801IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.853780804IPR000048IQ motif, EF-hand binding site
PfamPF006120.0022781801IPR000048IQ motif, EF-hand binding site
SMARTSM0001519859881IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.13E-5859886IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.078861889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MESGFSDRLV GSEIHGFHTL RDLDVPNIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVK  60
LPMSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDIP  120
TFVRRCYWLL DKTLEHVVLV HYRETQEVGS FSVSDQSAPG LLSEESDSGA ARPSDSLTVI  180
NHAIRLHELN TLEWDELLTN DPGNSILHGG DKIPSFDQQN QIAVKGSVND GSTLSGYQLS  240
AEKSAFGNLT EAVVRNGNAQ FSGPDNVYRQ LTGSQVYLDA QRKNSVVLGA RDSLDILIND  300
GLQSQDSFGR WMNSIIDDSP VSVDDATVES PISSGYDSFA SPGMDQHQSS IQEQMFIITD  360
FSPAWGFSNE TTKILVTGYF HEQYLHLAKS NLFCICGDAF VPAEIVQAGV YSCMVSPHSP  420
GLVNLCLSLD GSKPISQILN FEYRAPSVHD SVVFSEDKSK WEEFHLQMRL AYLLFSTSKT  480
LNVLSSKVSP AKLKEAKKFA HKTSNISNSW AYLIKSIEDS RISVAQAKDG LFELSLKNTI  540
KEWLLERVLE GCKTTEYDAQ GLGVIHLCAI IGYTWAVYLF SWSGLSLDFR DKHGWTAMHW  600
AAYYGREKMV AALLSAGAKP NLVTDPTKEN PGGCTAADLA SAKGYDGLAA YLSEKALVAQ  660
FESMIIAGNA SGSLQMTATD TVNSENLSEE ELHLKDTLAA YRTAADAAAR IQTAFREHSL  720
KVYTKAVQFS SPEDEARNII AAMKIQHAFR NYDSKKKIAA AAHIQHRFHT WKTRKNFLNM  780
RRQAIKIQAA FRGFQERRQY RKIIWSIGVL EKAILRWRLK RKGFRGLQVE PVETDVDPKH  840
ESDTEEDFYK ISQKQAGERV ERSVIRVQAM FRSKQAQEQY RRMKLTYNQA TVEYEGLLDT  900
DMVESDL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G107900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2081390.0AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462499.10.0calmodulin-binding transcription activator 5 isoform X3
RefseqXP_024462500.10.0calmodulin-binding transcription activator 5 isoform X4
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A3N7FIW00.0A0A3N7FIW0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]