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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.008G098400.1 |
Common Name | POPTR_0008s09790g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MIKC_MADS |
Protein Properties |
Length: 243aa MW: 27765.4 Da PI: 8.1423 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.008G098400.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 97.2 | 7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s
Potri.008G098400.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNSGKLFEFCS 59
79***********************************************96 PP
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2 | K-box | 91.7 | 1.3e-30 | 77 | 174 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
+ +g + e++++++ +qe+ kLk +++ Lqr+qR+llGedL++L eL qLe+qL++slk+iRs+K +++l++++elq+ke+ l e+n+a
Potri.008G098400.1 77 ALEGGQSEKETQQNNYQEYLKLKTRVDVLQRSQRNLLGEDLGNLGTMELDQLENQLDSSLKQIRSRKGQFVLDELSELQRKEELLLETNNA 167
566677889999******************************************************************************* PP
K-box 94 Lrkklee 100
L++klee
Potri.008G098400.1 168 LKRKLEE 174
****987 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.32E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.3E-26 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.197 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN SGKLFEFCSS 60 SNMATTIEKY QRFSYGALEG GQSEKETQQN NYQEYLKLKT RVDVLQRSQR NLLGEDLGNL 120 GTMELDQLEN QLDSSLKQIR SRKGQFVLDE LSELQRKEEL LLETNNALKR KLEETSAAIR 180 LSWKVGEQRV PYSFQPVQPY DPIEPLQYNS TFQFGYNPAE TDQATVTSSS QNVNGFIPGW 240 ML*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 8e-27 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 8e-27 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 8e-27 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 8e-27 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU121637 | 0.0 | EU121637.2 Populus deltoides clone F049-A07 MADS-box protein (MADS1) mRNA, complete cds. |