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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G088000.1 | ||||||||
Common Name | POPTR_0008s08760g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 449aa MW: 49617.2 Da PI: 7.5185 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 138 | 183 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Potri.008G088000.1 138 RGHWRPAEDTQLKKLVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 183 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.3e-18 | 190 | 233 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ Potri.008G088000.1 190 RKAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 233 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.039 | 133 | 184 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-14 | 137 | 186 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.86E-28 | 138 | 231 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-15 | 138 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 139 | 191 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.09E-13 | 141 | 182 | No hit | No description |
PROSITE profile | PS51294 | 26.919 | 185 | 239 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-15 | 189 | 237 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 190 | 232 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 192 | 238 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.31E-12 | 192 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MARTLLHMQR QIITAEINGL ACYYSTSPSS STSSPCSSMG MIDRDIGSLC PKSGMTPPTS 60 SFHEMENGRF TWGFPFMGNY HANSDTAVEV RVSDSSDGFG ENNETVNHEA NSSNEENPDE 120 NMMSGKETES GQSKLCTRGH WRPAEDTQLK KLVALYGPQN WNLIAEKLEG RSGKSCRLRW 180 FNQLDPRINR KAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR 240 EQSSAYRRRR LSQSVNRRTE ETPSFVGRDA GMKTVQPPYC PSISSAGGLN KLSPCQIGNF 300 NGAGRGGVDY GLNGSPHMTS GGEAVSSIKV PQSGFCAQQT PFDFFSGPKS NDMMGMFSQT 360 ISWDRPNNEP RISGFYPQQH PSYILTMQQS NHQYPYCFSD STASTLPQAV SASEPSCSSP 420 SVADQSRVSG HSETVPPPFI DFLGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-34 | 138 | 238 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-34 | 138 | 238 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-34 | 138 | 238 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 245 | 250 | YRRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G088000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312252.1 | 0.0 | transcription factor CSA | ||||
TrEMBL | B9HI82 | 0.0 | B9HI82_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s08760.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-72 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G088000.1 |
Entrez Gene | 7460696 |