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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.008G080300.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
C3H |
Protein Properties |
Length: 512aa MW: 55447 Da PI: 8.2547 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.008G080300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 34.3 | 3.9e-11 | 156 | 180 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C +++ t tCk+Gd+CkF H+
Potri.008G080300.1 156 GEKDCAYYMLTRTCKFGDTCKFDHP 180
7889********************9 PP
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2 | zf-CCCH | 35.4 | 1.8e-11 | 207 | 233 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++ + C++f++t CkyG +CkF+H++
Potri.008G080300.1 207 PGVPDCPYFLKTQRCKYGLNCKFNHPK 233
5789*********************96 PP
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3 | zf-CCCH | 40.6 | 4.2e-13 | 255 | 279 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C f+++tG+Ck+G++CkF+H++
Potri.008G080300.1 255 EPPCAFYMKTGICKFGATCKFHHPK 279
79*********************96 PP
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4 | zf-CCCH | 38.7 | 1.7e-12 | 333 | 359 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+f+++tG CkyG++C+++H++
Potri.008G080300.1 333 PGEVDCPFYLKTGSCKYGATCRYNHPE 359
57899********************96 PP
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5 | zf-CCCH | 41.3 | 2.6e-13 | 415 | 440 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C+f+++tG+Ck+G++CkF+H+
Potri.008G080300.1 415 PGQAECDFYMKTGECKFGETCKFHHP 440
5789*********************8 PP
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6 | zf-CCCH | 39.7 | 8e-13 | 472 | 493 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27
C+++++tGtCkyG++CkF H+p
Potri.008G080300.1 472 CPYYMKTGTCKYGATCKFDHPP 493
********************96 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 3.6E-4 | 154 | 181 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.896 | 154 | 182 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-5 | 155 | 181 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-9 | 156 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-4 | 160 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-6 | 206 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 206 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-9 | 208 | 233 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 211 | 236 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 212 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.441 | 252 | 280 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-7 | 252 | 279 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-10 | 255 | 279 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 256 | 279 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-5 | 257 | 278 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.554 | 332 | 360 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-7 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 334 | 359 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 338 | 359 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.206 | 414 | 442 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-7 | 414 | 441 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 415 | 443 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-11 | 416 | 440 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-5 | 420 | 440 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.666 | 466 | 494 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 466 | 493 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 470 | 493 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 472 | 491 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-10 | 472 | 493 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 512 aa
Download sequence Send
to blast |
MAKQLYGYGA PATTSASRSR TDSYLTDSVL TRYLGTGSDP LSSDSSKYSA SSSMYLTQSD 60 SALRYSVDRG IASAAAAATS PHLSSWPPPP GVDAPSAVDS LVPGLKRTPE VLYHPTLLGA 120 HSTIGQSEDW YSTNALAKRA RFETTSHLPI YPQRPGEKDC AYYMLTRTCK FGDTCKFDHP 180 VWVPEGGIPD WKEVPPIATS ETFPDRPGVP DCPYFLKTQR CKYGLNCKFN HPKEKMSLGV 240 SENTSISALP ERPSEPPCAF YMKTGICKFG ATCKFHHPKD IQISLAGQGN DDGVQTNSVV 300 DNGGITGDVN VIKALVSVTP ALLHNSKGLP MRPGEVDCPF YLKTGSCKYG ATCRYNHPER 360 TAINPPAAAI GHPIIAPSMA NLNLGVFSPA ASIYQTIDPR LSTLGVGPTV YPQRPGQAEC 420 DFYMKTGECK FGETCKFHHP IDRSAPTAKQ TEPQTVKLTL AGLPRREGAV HCPYYMKTGT 480 CKYGATCKFD HPPPGEVMVF PNLKELLMQK Q*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |