PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G076400.1
Common NamePOPTR_0008s07610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 719aa    MW: 78849.7 Da    PI: 6.4495
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G076400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-10290346155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Potri.008G076400.1 290 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 346
                         57*******************4444.2455535555.7799999*************98 PP
2AP246.68.3e-15389440155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.008G076400.1 389 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 440
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-8290346IPR001471AP2/ERF domain
CDDcd000187.33E-18290356No hitNo description
SuperFamilySSF541713.6E-14290356IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-11291356IPR001471AP2/ERF domain
SMARTSM003801.5E-21291360IPR001471AP2/ERF domain
PROSITE profilePS5103217.016291354IPR001471AP2/ERF domain
PRINTSPR003675.9E-6292303IPR001471AP2/ERF domain
PfamPF008471.0E-9389440IPR001471AP2/ERF domain
CDDcd000181.39E-24389448No hitNo description
SuperFamilySSF541711.37E-17389449IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-18390448IPR001471AP2/ERF domain
SMARTSM003802.8E-33390454IPR001471AP2/ERF domain
PROSITE profilePS5103219.045390448IPR001471AP2/ERF domain
PRINTSPR003675.9E-6430450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MASTNNWLGF SLSPQELPSS QSDHHDHPQN TDSRLRFHSD EISGTDVSGE SFDLTSDSTA  60
PSLNLPASFG ILEAFRNNQS QDWNNMKRSG INEDTSYNTT SDVPIFMGSS CNSQNIDQNQ  120
EPKLENFLGG HSFGNHEHKL NVCSTMYGST GHYMFHNCSL QLPSEDASNE RTSSNGGADT  180
SINNNNTNSS IGLSMIKTWL KNQPAPTQQD TNNKSNGGAQ SLSLSMSTGS QSGSDLPLLA  240
VNGGGNRTRG EQSSSDNNKQ QKTTPSLDSQ TGAIEVVPRK SIDTFGQRTS IYRGVTRHRW  300
TGRYEAHLWD NSCRREGQTR KGRQGGYDKE DKAARAYDLA ALKYWGTTTT TNFPMSNYEK  360
EIEEMKHMTR QEHVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  420
FSTQEEAAEA YDIAAIKFRG LNAVTNFDMN RYDVNSIMES STLPIGGAAK RLKEAEHAEI  480
TTRVQRTDDH DSTSSQLTDG ISNYGTAAHH GWPTIAFQQA QAFTMHYPYG QRLWCKQEQD  540
SDNHSFQELH QLQLGNTQNF LQPSVLHNVM SMESSSMEHS SGSDSVMYSS GGHDGTGTGT  600
NGSYQGIGYG SNTGYAIPMA TVIANDVNTQ DQGNGYGDGE VKALGYENMF SSSDPYHARN  660
LYYLSQQSSA GVIKASAYDQ GSTCNNWLPT AVPTIAARSN NMAVCHGAPT FTVWNEST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G076400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462525.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB9HHX90.0B9HHX9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-130AP2 family protein