PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G071500.1
Common NamePOPTR_0008s07150g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 164aa    MW: 18066.7 Da    PI: 7.7737
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G071500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.29e-41111101100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+ dPvyG++g i  lq+++ +l+
  Potri.008G071500.1  11 SCAACKFLKRRCTPNCIFAPYFRSDEPKKFARVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLTDPVYGCIGAIALLQRKMVELQ 101
                         6****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++la ++++
  Potri.008G071500.1 102 VDLAIARAR 110
                         ***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.42510111IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MRNQEPRASS SCAACKFLKR RCTPNCIFAP YFRSDEPKKF ARVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LAYEAEARLT DPVYGCIGAI ALLQRKMVEL QVDLAIARAR LARYAANSPP  120
ILNDHGSMIP TLAEFPACGG LVDSFNQSSS DTMNDFSQFP FIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4861156115LOB family transfactor Ramosa2.1
5ly0_B3e-4861156115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.51390.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G071500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1448260.0EF144826.1 Populus trichocarpa clone WS01118_L02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312171.21e-118LOB domain-containing protein 21
SwissprotQ9SRL88e-61LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA9P9I71e-117A9P9I7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07150.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.19e-58LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]
  2. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]