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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.008G062700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB |
| Protein Properties |
Length: 413aa MW: 44610.6 Da PI: 5.8307 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.008G062700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 53 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw +
Potri.008G062700.1 53 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 98
79******************************.***********985 PP
|
| 2 | Myb_DNA-binding | 61.6 | 1.6e-19 | 105 | 149 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r+++T+eEd +++ a++++G++ W++Iar ++ gRt++++k++w++
Potri.008G062700.1 105 RKPFTEEEDRIIIAAHAKHGNK-WAAIARLLP-GRTDNSIKNHWNST 149
789*******************.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MQNQTENNND AMRITEGDRE NQTNSPTGGD GGAESGELGG GIGGNGRTNG KVKGPWSPEE 60
DAVLSQLVSK FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PCLTRKPFTE EEDRIIIAAH 120
AKHGNKWAAI ARLLPGRTDN SIKNHWNSTL RRRWADLIRL KPGTSDVMED GSIEITRASS 180
EETLSVCDIS SSQPPEVRDV TIDDQPSQHE DKAQTDTIPQ TNEVTVATEP HGNPTLPRPE 240
ARVSAFKVYN PPSGLKMSSG LTRTLPTHGP SVQTPKPDLG SCKFLEDVHC EPIIPSRCGY 300
GCCATPSGGH PPSSLLGPEF VEYEEPPPFS SQELISIATD LNNIAWMKSG LENSSTGIPS 360
NAASYRMSQG TPVDSQMGMS EQNLRNGHMH FEEGRSRLMG TMAGTISTQM PA*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | GU278456 | 0.0 | GU278456.1 Populus balsamifera isolate WHR03 haplotype A myb family transcription factor 109 gene, partial sequence. |
| GenBank | GU278459 | 0.0 | GU278459.1 Populus balsamifera isolate STL13 haplotype B myb family transcription factor 109 gene, partial sequence. |
