 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.008G059000.1 |
Common Name | POPTR_0008s05930g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
C2H2 |
Protein Properties |
Length: 305aa MW: 33725.6 Da PI: 7.1772 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.008G059000.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C++ F++ L H+++H
Potri.008G059000.1 55 YSCSFCKREFRSAQALGGHMNVH 77
99*******************99 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MEQAQYWLWM KRKQLLMSQL EAATDSNSKC SLEEKAFAED ASGHLGGCIW PPRSYSCSFC 60 KREFRSAQAL GGHMNVHRRD RARLKQSLTL SPHKDVFRHQ NHIQRSLKSL GSHFPTEVCN 120 LDNYDLDPKL SVSGTINIAS TLSTSRFSAL STHENLSDHA FVSPFSSYFE QEQHKGYPHF 180 HNNLSGSDHS LAVRLLNDSE SKPEAEKNQG KLDSTCSRHD NFVATDLFMG LSSAPNSQSL 240 SSPDSCGNEA ISCKGPTTNV SVLSLLVKPR SNYGCTQSEA IGPMSSSMED IDLELRLGEP 300 PKVK*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AM444546 | 3e-43 | AM444546.2 Vitis vinifera contig VV78X197403.26, whole genome shotgun sequence. |