PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G055100.2 | ||||||||
Common Name | POPTR_0008s05520g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 335aa MW: 35580.9 Da PI: 9.2882 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.2 | 1.8e-38 | 71 | 130 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+s ntkfCy+nnyslsqPr+fCk+CrryWt GGalrnvPvGgg+r+nk+s+ Potri.008G055100.2 71 ETALKCPRCQSPNTKFCYFNNYSLSQPRHFCKTCRRYWTSGGALRNVPVGGGCRRNKRSK 130 6789*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-29 | 54 | 119 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-32 | 73 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.311 | 74 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 76 | 112 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVFSSIPAYL GSRNWQQQLN NQPPGAGNEN PQLPPQPAPP PGGGYGDGST GSFRPGSMTD 60 RARLAKVQLP ETALKCPRCQ SPNTKFCYFN NYSLSQPRHF CKTCRRYWTS GGALRNVPVG 120 GGCRRNKRSK GSGRSKFPIK AVSSSSGGLA SNCCTADILG HMPPPPPQLP ILPPLHHLGD 180 YNSADIGLDF GGIQHSIGVT AGGGDGVEFQ IGSSTSSNGV AGSILSSGLV EQWRLQQVQQ 240 QVQQFPFFSN MEPPSGLFSF EGGGIESSNY AGQIRSKPLD TTGITHLATV KTEENQRLNL 300 SKKVLGISGI DQHWGGNNAW TDLPGFTSST SHLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G055100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311164.3 | 0.0 | dof zinc finger protein DOF3.6 isoform X2 | ||||
TrEMBL | A0A2K1ZCB1 | 0.0 | A0A2K1ZCB1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s05520.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.2 | 1e-46 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G055100.2 |
Entrez Gene | 7488106 |