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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.008G031800.1 |
| Common Name | POPTR_0008s03170g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
NAC |
| Protein Properties |
Length: 566aa MW: 62971.2 Da PI: 4.4278 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.008G031800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 170.2 | 6.4e-53 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
l+pGfrFhPtdeelv +yLk+kv++k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky +g+++nrat++gyWk+tgkd
Potri.008G031800.1 10 LAPGFRFHPTDEELVRYYLKRKVTNKPFRF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYGNGSKTNRATEKGYWKTTGKD 99
579**************************9.99**************95347777888********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ + ++++vg+kktLv+++grap+g++++Wvmheyrl
Potri.008G031800.1 100 RPIRQ-NSQVVGMKKTLVYHQGRAPRGQRSNWVMHEYRL 137
****9.99*****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009644 | Biological Process | response to high light intensity |
| GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 566 aa
Download sequence Send
to blast |
MGRSDSATSL APGFRFHPTD EELVRYYLKR KVTNKPFRFD AISVTDIYKS EPWDLPDKSK 60
LKSRDLEWYF FSMLDKKYGN GSKTNRATEK GYWKTTGKDR PIRQNSQVVG MKKTLVYHQG 120
RAPRGQRSNW VMHEYRLVDE ELEKAGIAQD AFVLCRIFQK SGTGPKNGEQ YGAPFIEEEW 180
DDDEVPLLPS EEMVLTEEAP VGDDAYLEMN ELGQVCTCIV TCVSVTCSLG SICHQTSHNF 240
DTGITSENTA LPQNFYYGEA SNYVEQPRDF SEDDLKPMLR GAENRHGPSL PAEENLDLPG 300
QYETDAVKNE YNNAEPMNNV NAVDVNYLFD ESYLDALNNL PQSEGLFLEA NDLSNPVEPE 360
TGGDSSGFDM LEEYLNFFDA DDENMSFDPS DIFASDTAVS NQQPPPQEGG TDEVLKAIQK 420
PLETHGNVGP SSSKQKPEAM EFDSDFKYPF IKQASHMLGK IPAPPALASE FPSKDAALRL 480
RSASSSSIHV TAGVIRIENM SLGGNGTEWS FGKNGNVDVI LSFGLPQQEG GPAKSVVSRG 540
WLFLMFFWVL ILSVSYKIGT CICAK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 2e-45 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-45 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-45 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-45 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-45 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-45 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-45 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-45 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Liang M, et al.
Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
Traffic, 2015. 16(10): p. 1062-74
[PMID:26201836] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
Plant Physiol., 2015. 169(2): p. 1275-91
[PMID:26304848] - Gladman NP,Marshall RS,Lee KH,Vierstra RD
The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
Plant Cell, 2016. 28(6): p. 1279-96
[PMID:27194708] - Tang Y,Zhao CY,Tan ST,Xue HW
Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
PLoS Genet., 2016. 12(8): p. e1006252
[PMID:27529511]
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