PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G011800.6
Common NamePOPTR_0008s01240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 782aa    MW: 88726.1 Da    PI: 6.4133
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G011800.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1492e-1566141289
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHel 89 
                         fY++YAk++GFs+ + + ++s+ +g i++ +f Cske +++++ ++              C+a l++ +++  +++w vtk+++eHnH+l
  Potri.008G011800.6  66 FYDTYAKRMGFSTHVGQFTRSRPDGPIVTWEFACSKEVFKRKNIES--------------CNAVLRIVRKDshSDNWAVTKFVEEHNHSL 141
                         9***************************************998877..............******98887789**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1266141IPR004330FAR1 DNA binding domain
PfamPF105514.0E-30273365IPR018289MULE transposase domain
PROSITE profilePS5096611.041550586IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-11550584IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-8561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MDGEVVDVEV REGNKHLAVI ADPNETEKQN TTGNYTEAAV RNQDDDGIAL PQVGMEFESE  60
DAAKTFYDTY AKRMGFSTHV GQFTRSRPDG PIVTWEFACS KEVFKRKNIE SCNAVLRIVR  120
KDSHSDNWAV TKFVEEHNHS LGTPGKVLRP RRHFAGATKN MAETLDATND VYVSTDGSHV  180
PHEPNHVRNA FPVEPNNLVR NVAPLPATYF RAPGGRKSLG RDAQSLLNYF KKMQAENPGF  240
YYAIQLDDEN RMTNVFWADA RSRIAYSHFG DAVVFDTMYR PNQYQVPFAP FTGMNHHGQM  300
VLFGCALLLD ESESSFTWLF RTWLSAMNGQ PPVSFTTDQD RAIHMAVALV FPETRHCICK  360
WHILREGQDR LAHIYLAHPS FYGELYSCIN FSETNEDFES SWASLLEKYD LQRIEWLQAV  420
YNARQQWAPV YFRNTFFAAL SSNHGISSLF DGYVNQQTTI PLFFKQYELV LEHSLEKEIE  480
ADYDTICTTP VLKTPSPMEQ QAANLYTKKV FTKFQEELVE TFVYTANKIE RDGMATKYRV  540
AKYEHDDKAY IVMLNISEMQ ASCSCQMFEY CGILCRHILT VFTVTNILTL PSHYILKRWT  600
RNAKSWIGSE EQSADSQGLD TLTSRFNNLC LEAIKYAEEG AIAIETYNAA ISNLKEGGTK  660
IASVKKSVAK VTPYRSHFSG NSQEENNKKT PTAPHEMIPS LWPWQDAMPP RFNLNDGGVP  720
CADLNQPSMA PVSIHRDGGP TDNSVVLTYF KSMTWVIENK TLTPAGKVAV INLKVRSLFF  780
Y*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G011800.6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379425.20.0protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_006379426.20.0protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2K1Z9V40.0A0A2K1Z9V4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s01240.30.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]