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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G011800.4 | ||||||||
Common Name | POPTR_0008s01240g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 861aa MW: 97563.2 Da PI: 6.4802 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 48.9 | 2.2e-15 | 66 | 141 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHel 89 fY++YAk++GFs+ + + ++s+ +g i++ +f Cske +++++ ++ C+a l++ +++ +++w vtk+++eHnH+l Potri.008G011800.4 66 FYDTYAKRMGFSTHVGQFTRSRPDGPIVTWEFACSKEVFKRKNIES--------------CNAVLRIVRKDshSDNWAVTKFVEEHNHSL 141 9***************************************998877..............******98887789**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-12 | 66 | 141 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.5E-30 | 273 | 365 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.041 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.2E-11 | 550 | 584 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.3E-8 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence Send to blast |
MDGEVVDVEV REGNKHLAVI ADPNETEKQN TTGNYTEAAV RNQDDDGIAL PQVGMEFESE 60 DAAKTFYDTY AKRMGFSTHV GQFTRSRPDG PIVTWEFACS KEVFKRKNIE SCNAVLRIVR 120 KDSHSDNWAV TKFVEEHNHS LGTPGKVLRP RRHFAGATKN MAETLDATND VYVSTDGSHV 180 PHEPNHVRNA FPVEPNNLVR NVAPLPATYF RAPGGRKSLG RDAQSLLNYF KKMQAENPGF 240 YYAIQLDDEN RMTNVFWADA RSRIAYSHFG DAVVFDTMYR PNQYQVPFAP FTGMNHHGQM 300 VLFGCALLLD ESESSFTWLF RTWLSAMNGQ PPVSFTTDQD RAIHMAVALV FPETRHCICK 360 WHILREGQDR LAHIYLAHPS FYGELYSCIN FSETNEDFES SWASLLEKYD LQRIEWLQAV 420 YNARQQWAPV YFRNTFFAAL SSNHGISSLF DGYVNQQTTI PLFFKQYELV LEHSLEKEIE 480 ADYDTICTTP VLKTPSPMEQ QAANLYTKKV FTKFQEELVE TFVYTANKIE RDGMATKYRV 540 AKYEHDDKAY IVMLNISEMQ ASCSCQMFEY CGILCRHILT VFTVTNILTL PSHYILKRWT 600 RNAKSWIGSE EQSADSQGLD TLTSRFNNLC LEAIKYAEEG AIAIETYNAA ISNLKEGGTK 660 IASVKKSVAK VTPYRSHFSG NSQEENNKKT PTAPHEMIPS LWPWQDAMPP RFNLNDGGVP 720 CADLNQPSMA PVSIHRDGGP TDNSVVLTYF KSMTWVIENK TLTPAGKVAV INLKLQDYGK 780 NPSGETEVQF RLTKVTLEPM LRSMAYISQQ LSTPANRVAV INLKLQDTKT TTGETELKFQ 840 VSRDTLGSML RSMAYIREQL * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G011800.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379425.2 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_006379426.2 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2K1Z9V4 | 0.0 | A0A2K1Z9V4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s01240.3 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G011800.4 |
Entrez Gene | 18101280 |
Publications ? help Back to Top | |||
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