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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G138300.1 | ||||||||
Common Name | POPTR_0007s01080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 384aa MW: 43296.7 Da PI: 7.3832 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.6e-08 | 124 | 145 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f r G C++G++C FaHg Potri.007G138300.1 124 AVCPEFIR-GGCNRGENCEFAHG 145 78******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 9.73E-5 | 119 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.887 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-5 | 124 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-5 | 125 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.484 | 155 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6 | 155 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGTISAEQHK LFPSHQILSP HKPLIRDLEI PPRKLLTRKT HQETLDVSPY ETDLQEFLPY 60 NDSNNEIDID DELDPYSSDH FRMYEFKVRR CTRSRSHDWT DCPFAHPGEK ARRRDLRRFH 120 YSGAVCPEFI RGGCNRGENC EFAHGVFECW LHPFRYRTEA CKDGKNCKRK VCFFAHSPRQ 180 LRILPEGSSH NKTLGSSPCS SLNHGHCCCA VCHSMTSSPT STLLGMSPLS PPLSPSLTPS 240 LSPVKHQSLS RFSPISRYSE TLSKFRAGVV SYKDVFTELM SSLEAMNFNE AAGVSSPMSL 300 YPNHKRNVNN TPRNIDVSFD GEDQPQFILS PSTPTPSSSF FNRDCSSNKG LFIDDIHKIN 360 DHNNGGLACT PDPDLGWVNE LLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G138300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309749.3 | 0.0 | zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A2K1ZU29 | 0.0 | A0A2K1ZU29_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01080.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6261 | 26 | 44 |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 2e-74 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G138300.1 |
Entrez Gene | 7459958 |