PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G138100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 31985.2 Da PI: 10.0567 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 102 | 152 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+ta eAa+a+++a+++++g+ Potri.007G138100.1 102 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAVEAARAYDKAAREYRGA 152 69*******.**********8...557**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-34 | 102 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-29 | 102 | 161 | No hit | No description |
Pfam | PF00847 | 8.4E-13 | 102 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 102 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 102 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 102 | 160 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-10 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAATRLFVDR YSGTRQAEEW TRVHILMVAH RPPDPNLHFI FSGDYFLSSV YLRHWLLYCN 60 LRYILRLFSS LGFKKMAPKK LNGNDNGSLK KASGDHDKKE IHYRGVRKRP WGRYAAEIRD 120 PGKKSRVWLG TFDTAVEAAR AYDKAAREYR GAKAKTNFPI AEKVVDYDDE KQSSSQSSTV 180 ESSSSPVVSA VARDVTRQVG GVVGTGRFPF VFQQQPPHVN AVGPVWFLDS TVKPEFVAQR 240 FPVRYDPVGL EGGAHSDSDS SSVIDFKPRS SILHLDLNLP PPADA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 99 | 160 | 2 | 64 | ATERF1 |
3gcc_A | 3e-20 | 99 | 160 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12656 | 0.0 | bud| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G138100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310408.2 | 1e-151 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A3N7FDB1 | 1e-150 | A0A3N7FDB1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01110.1 | 1e-150 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 8e-42 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G138100.1 |