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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G133400.1 | ||||||||
Common Name | POPTR_0007s01530g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Nin-like | ||||||||
Protein Properties | Length: 989aa MW: 108191 Da PI: 5.1314 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.8 | 5.2e-29 | 598 | 649 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Potri.007G133400.1 598 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.097 | 581 | 669 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.6E-26 | 601 | 649 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.25E-20 | 886 | 971 | No hit | No description |
PROSITE profile | PS51745 | 20.417 | 887 | 970 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.2E-20 | 887 | 970 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.2E-23 | 887 | 970 | No hit | No description |
Pfam | PF00564 | 9.9E-17 | 888 | 969 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.12E-29 | 888 | 969 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 989 aa Download sequence Send to blast |
MENSFSSKEK GMGYWASPRA QMDSVTTFDG APRNSFFEDP FNSFSELMNF DMYAGWCNNS 60 SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS 120 HFGCPSDSID ADDLGAKHSN GAGQQNHFPN TTHYIMSQPV GPSLDERMLR ALSLLKVSYG 180 GGILAQVWVP IRSGDQYMLS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV 240 FISKVPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP 300 DFDSEMENVC HALEAVNLRS TAPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT 360 WMPCNYTEEA VDEIIKVRVK EANSRSSGKC ILCIEGTACY VNDREMQGFV HACAEHYIEE 420 GQGIAGKAVQ SNHPFFFPDV KTYDITEYPL VHHARKYGLN AAVAIRLRST YTGDDDYILE 480 LFLPVNIKES SDQQLLLNNL SGTMQRICKS LRTVSDTEFA GQECSEVGLP KEAVPSFQPM 540 SISNGSSQTA LSEGNLNSAA KMPLNVCSSK NDQIESNSSN EQTTSGSRRQ VEKKRSTAEK 600 TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KFDPTTGGFV AGGSMNQEFD HRNGFVFQAK NLSNGNSEPA NHDVVSVLPA 720 SCTDGNNSTV KVEEDECCIG SGGMLKECSV HVIDCSADSK SVAIDAGLCE QTSFGSGSWA 780 CLEIDPPGSF AKAGNIGGMK NGGIILENSD SRIVPRSSLP FVAAQEMDTK MEGDDGNVER 840 NQPTCSSMTD SSNSSGSIMH GSISSSPSFE ERKHSEEKTS FGDGDLKITV KARYREDIIR 900 FKFDPSAAGC FQLYEEVSKR FKLQTGTFQL KYLDDEEEWV LLVSDSDLLE CLEIMEYVGT 960 RSVKFLVRDT PFAMGSSDSS SCFLTGRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G133400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU231638 | 1e-167 | CU231638.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461462.1 | 0.0 | protein NLP9 | ||||
Refseq | XP_024461463.1 | 0.0 | protein NLP9 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A2K1ZTV0 | 0.0 | A0A2K1ZTV0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01530.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G133400.1 |
Entrez Gene | 7469575 |
Publications ? help Back to Top | |||
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