 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.007G129500.1 |
| Common Name | POPTR_0007s01870g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
FAR1 |
| Protein Properties |
Length: 274aa MW: 31258.2 Da PI: 5.9087 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.007G129500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 91.6 | 1e-28 | 109 | 196 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
Potri.007G129500.1 109 FYNAYATRIGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHTHTLTP 196
******************************************9988..9**************************************975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009585 | Biological Process | red, far-red light phototransduction |
| GO:0010018 | Biological Process | far-red light signaling pathway |
| GO:0042753 | Biological Process | positive regulation of circadian rhythm |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MSSLIRRRVG MEVIETIDVV FTVDFIVDGD ANGDVPGNAV VDIARAGDEN EIFENSAEEE 60
FEQYEDRKMD KETLDIDTIT DGAPAMSMIT ADEPYLGQEF DSEAAAHAFY NAYATRIGFV 120
IRVSKLSRSR RDGSAIGRAL VCNKEGFRMP DKREKIVRQR AETRVGCRAM ILVRKISSGK 180
WVVTKFVKEH THTLTPGKGR RDCIYEQYPN EHDKIRELSQ QLAIEKKRSA TYKRHLELIF 240
EHIEEHNESL SKKIQHTVDS VRDMENKEQQ SQT*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC214628 | 0.0 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
