PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G128800.3

Common Name

POPTR_0007s01940g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 192aa MW: 21886.9 Da PI: 7.4438

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G128800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.5	5.1e-24	76	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++ + +++ + + tr gC a++++ ++ gkw+vtk+++eH+H+ Potri.007G128800.3 76 EFYISYGRCTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHrKDR--IlpPPPITREGCGAMIRLALK-GGKWVVTKFVKEHTHK 163 6****************************************98882233..244899***********.************** PP FAR1 89 la 90 l+ Potri.007G128800.3 164 LM 165 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-21	76	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MDKQSVHGFD SNDSDLDLHG EAYECGRIED ELQNNLDFCV DEDDKTSVQC IELAVNTEGL 60 EPCEGMEFNS RDEAREFYIS YGRCTGFTVR IHHNRRSRVN NQVIGQDFVC SKEGFRAKKY 120 VHRKDRILPP PPITREGCGA MIRLALKGGK WVVTKFVKEH THKLMSPSKV PWRGSGKQLI 180 SEVCLRFKMA F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G128800.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309804.2	1e-136	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9HH49	1e-135	B9HH49_POPTR; Uncharacterized protein
STRING	POPTR_0007s01940.1	1e-135	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-25	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.007G128800.3
Entrez Gene	7491756