PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G128700.3

Common Name

POPTR_0007s01950g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 249aa MW: 28544.5 Da PI: 5.6857

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G128700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	80	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s ++ ++ r+fvCs+eg+r+ +++ +++ +r++tr gCka++++ ++ gkw+vtk+++eHnH+l+ Potri.007G128700.3 80 DFYYEYAKRTGFTIRTNRIRHSLKSMAVIGRDFVCSREGFRAAKHSLrKDRVLPPRPVTREGCKAMIRLAARDGGKWVVTKFVQEHNHKLM 170 6***************************************9998823333449********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-24	80	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTSTTDGRSF LDIDEGSDEE MFESFGEHEA SQDGLLQQCI SQRVVDNGMI LTESSMENLS 60 VDGLEPYTGM TFPSLDDARD FYYEYAKRTG FTIRTNRIRH SLKSMAVIGR DFVCSREGFR 120 AAKHSLRKDR VLPPRPVTRE GCKAMIRLAA RDGGKWVVTK FVQEHNHKLM THCKFLGELP 180 TINILSEEEK DKKIQDLYGE LQRERERSAA FQQQLCMILK DLKEHEEFVS LRVEDIIKTL 240 KEIELGVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G128700.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	1e-112	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309805.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024461384.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9HH50	0.0	B9HH50_POPTR; Uncharacterized protein
STRING	POPTR_0007s01950.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-41	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.007G128700.3
Entrez Gene	7491757