PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G128700.2 | ||||||||
Common Name | POPTR_0007s01950g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 28544.5 Da PI: 5.6857 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.6 | 1.6e-26 | 80 | 170 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s ++ ++ r+fvCs+eg+r+ +++ +++ +r++tr gCka++++ ++ gkw+vtk+++eHnH+l+ Potri.007G128700.2 80 DFYYEYAKRTGFTIRTNRIRHSLKSMAVIGRDFVCSREGFRAAKHSLrKDRVLPPRPVTREGCKAMIRLAARDGGKWVVTKFVQEHNHKLM 170 6*****************************************9998823333449**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.8E-24 | 80 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTSTTDGRSF LDIDEGSDEE MFESFGEHEA SQDGLLQQCI SQRVVDNGMI LTESSMENLS 60 VDGLEPYTGM TFPSLDDARD FYYEYAKRTG FTIRTNRIRH SLKSMAVIGR DFVCSREGFR 120 AAKHSLRKDR VLPPRPVTRE GCKAMIRLAA RDGGKWVVTK FVQEHNHKLM THCKFLGELP 180 TINILSEEEK DKKIQDLYGE LQRERERSAA FQQQLCMILK DLKEHEEFVS LRVEDIIKTL 240 KEIELGVL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G128700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 1e-112 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309805.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024461384.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | B9HH50 | 0.0 | B9HH50_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01950.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15728 | 10 | 11 | Representative plant | OGRP8956 | 5 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-41 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G128700.2 |
Entrez Gene | 7491757 |