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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G119800.1 | ||||||||
Common Name | POPTR_0007s02800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GeBP | ||||||||
Protein Properties | Length: 505aa MW: 55125 Da PI: 4.6654 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 111.3 | 6.4e-35 | 146 | 240 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +qrlws+eDeiv+L G+++++ ++gk+p++d +f+ fvkks++++++++q+++KirrLKkK+ ++v+k +++ + fsk+hd ++ el+k Potri.007G119800.1 146 PQRLWSDEDEIVMLNGMVEYQIEKGKNPFADNGDFHGFVKKSLHVDATNNQFLDKIRRLKKKYFTDVEKNEKEIDEIFSKPHDLECVELAK 236 69*******************************************************************99******************** PP DUF573 94 kiWg 97 kiWg Potri.007G119800.1 237 KIWG 240 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.8E-30 | 147 | 240 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MARRRPFEVA PPAVSSSEEE EETDGEEETP KGTVQAQQNG TGEKQNDNEN GSEDDDDDDD 60 DDDEEEKEKP NLPPSKPSKP DSESDSETDS EDTESTQPPS PSLSGFTIKP ISPKRKPGPK 120 LEQPKKENDV EDKKAKRGAG AGGGGPQRLW SDEDEIVMLN GMVEYQIEKG KNPFADNGDF 180 HGFVKKSLHV DATNNQFLDK IRRLKKKYFT DVEKNEKEID EIFSKPHDLE CVELAKKIWG 240 AGGIEMGKKG NFNKKSGKNV SGGGGGGGGE GEGEGGGGVR GGGITLALAK KGNEEANGEK 300 GKLSVKKGKR GSNEEVKVEG KEGDLKKKRQ GLGGEADEGE AGNVKKGKRG LSEEVNGEGK 360 GKGVKREKRA ADEEMSGEGE EVNVIVKKQR RLVNDEINGG GMELSVKKRN AVANEELDRE 420 EAGSEDFWDK YPYLRLALDG EILPEYLKER TMLVLGMVGE EKLVELEREW RSLMKAKLEF 480 MVMQKDLIAK QIKLSLDAMN SQDS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G119800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309849.2 | 0.0 | GLABROUS1 enhancer-binding protein-like 1 | ||||
TrEMBL | B9HE52 | 0.0 | B9HE52_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s02800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20654 | 3 | 5 | Representative plant | OGRP4222 | 5 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 2e-24 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G119800.1 |
Entrez Gene | 7485015 |