PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G116600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 143aa MW: 14883 Da PI: 8.2135 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 7.6e-17 | 53 | 89 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ Potri.007G116600.1 53 CTHCGISSksTPMMRRGPSGPRTLCNACGLKWANKGV 89 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.2E-13 | 47 | 101 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.71E-12 | 50 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-15 | 51 | 93 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 8.655 | 53 | 95 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 53 | 80 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.33E-13 | 53 | 95 | No hit | No description |
Pfam | PF00320 | 1.8E-14 | 53 | 89 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MKGARLHLAA VECRVLDKMR ACWKLCDEGG SASSGCSGMQ GSGQDESMLE TLCTHCGISS 60 KSTPMMRRGP SGPRTLCNAC GLKWANKGVL RNISKLPIMS IQQSSMKTVA QVNGEANNSD 120 TITAAADTVS PNGDNSTLAT ET* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G116600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216601 | 7e-33 | AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460709.1 | 3e-89 | GATA transcription factor 24 | ||||
Swissprot | Q9LRH6 | 3e-24 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A2K1ZT14 | 3e-99 | A0A2K1ZT14_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s03130.1 | 3e-77 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 8e-26 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G116600.1 |
Publications ? help Back to Top | |||
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