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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.007G113800.1 |
Common Name | POPTR_0007s03430g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
M-type_MADS |
Protein Properties |
Length: 247aa MW: 27177 Da PI: 10.372 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.007G113800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 69.4 | 3.3e-22 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+i n+sn vtfskRr g++KKA+E+S+LC+aeva+i+fs+ k++ +
Potri.007G113800.1 15 KIANESNLMVTFSKRRSGLFKKASEISTLCGAEVAIIVFSPGKKVFSF 62
589**************************************9999887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MVRSSKGRQK LEMVKIANES NLMVTFSKRR SGLFKKASEI STLCGAEVAI IVFSPGKKVF 60 SFGHPSVEKV VERYVSGNIP QTSGAFHLIE AHRKARISEL NMKLTQAQNQ LEMEKKRGEE 120 LDKLRRASQS QNWWDSPLQE LSVAQLEQLK ASLLTLKQNL AMQAQQILLQ NSAPPQPFFS 180 PNPGAAGNLP FDTINTGFNS NMAVAPFSSN TTMTAFNANM TGTPFNQSST TMTPYGYNLG 240 YGNGFF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-17 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
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