PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G109100.6
Common NamePOPTR_0007s03840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 353aa    MW: 39101.2 Da    PI: 5.011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G109100.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.45.1e-4871351129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd elv++yLk+kv gkk+++ ++i+e++i+k+ PwdLp k ++++++ +wyfF++++kkya+g rk+rat+ gyWk+tgkd
  Potri.007G109100.6   7 LPPGFRFHPTDVELVKYYLKRKVLGKKFHF-QAIAEIEINKYAPWDLPnKsCLRTRDLKWYFFCPTEKKYASGVRKKRATDIGYWKTTGKD 96 
                         79***************************9.89**************95347777888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         ++v   k+e+vg+ ktLvf+ g+ p+ge+tdWvm eyrle
  Potri.007G109100.6  97 RSVQY-KNEVVGMIKTLVFHIGKPPRGERTDWVMYEYRLE 135
                         ****9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-575157IPR003441NAC domain
PROSITE profilePS5100553.1217157IPR003441NAC domain
PfamPF023651.0E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRNSSLPPG FRFHPTDVEL VKYYLKRKVL GKKFHFQAIA EIEINKYAPW DLPNKSCLRT  60
RDLKWYFFCP TEKKYASGVR KKRATDIGYW KTTGKDRSVQ YKNEVVGMIK TLVFHIGKPP  120
RGERTDWVMY EYRLEEKELA DKGIAQDEYV LCQIFKKDGP GPKNGAQYGA PFNEDEWDDG  180
DDEVEKEVNA QPAILPALMD APAFMLPNNP NMTIATSSCV PESMCTGPLI SCPSQAPSTA  240
CTTLPRVSND DVASTKALQF VHGGVNGGEA DSFAGMSAPA FQQPCNPNSS ILASSSSYVP  300
ENTCSAYIPS VGATQVEAPQ IVDDNDDILS MLAVFYNDNP ECGLWWDCKA RD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-45616316171NO APICAL MERISTEM PROTEIN
1ut4_B1e-45616316171NO APICAL MERISTEM PROTEIN
1ut7_A1e-45616316171NO APICAL MERISTEM PROTEIN
1ut7_B1e-45616316171NO APICAL MERISTEM PROTEIN
3swm_A1e-45616319174NAC domain-containing protein 19
3swm_B1e-45616319174NAC domain-containing protein 19
3swm_C1e-45616319174NAC domain-containing protein 19
3swm_D1e-45616319174NAC domain-containing protein 19
3swp_A1e-45616319174NAC domain-containing protein 19
3swp_B1e-45616319174NAC domain-containing protein 19
3swp_C1e-45616319174NAC domain-containing protein 19
3swp_D1e-45616319174NAC domain-containing protein 19
4dul_A1e-45616316171NAC domain-containing protein 19
4dul_B1e-45616316171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G109100.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310505.10.0NAC domain-containing protein 82 isoform X1
SwissprotQ9FY823e-88NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A2K1ZSL40.0A0A2K1ZSL4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03840.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.49e-86NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]