PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G107800.3

Common Name

POPTR_0007s03970g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 861aa MW: 95660.7 Da PI: 8.6878

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G107800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	6e-06	165	184	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f + G C++G+ C+F H Potri.007G107800.3 165 LCKDFVA-GRCRRGSHCPFLH 184 9****.*********** PP
2	zf-CCCH	18.1	4.8e-06	226	244	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+ f++ G C++G++C++aH Potri.007G107800.3 226 CNEFLK-GSCRRGESCRYAH 244 9***.*********** PP
3	zf-CCCH	19.3	2e-06	289	309	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G C+ G C+F+H Potri.007G107800.3 289 PCKFFAA-GNCRNGKYCRFSHN 309 79999.***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.6E-5	160	186	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.943	160	187	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	162	185	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-5	164	185	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.043	220	246	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.028	220	247	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.873	284	311	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0024	286	310	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	287	309	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MKEGGATSVR MSGSGRKRSS KWDLKEGPRM SFEDVEDNTW PGKAGISFRD KESRRDWLPP 60 EAAGGTRSKW SAMEPLPGRR SSRRDDNIDE DRSRTLKATY EDESYGTRMS PGLDEWRQKS 120 FRNSPKNEYK RTRRSQSRSR SRSRSPVHGF GHERTRSISS VSAQLCKDFV AGRCRRGSHC 180 PFLHQDTQTC EDDWERRPRK ASASKYPISH DSKQYPMGSG RSADCCNEFL KGSCRRGESC 240 RYAHHGASDP SSRGSANDGI RERDNDRRHR YASPERRAER ETRRAADIPC KFFAAGNCRN 300 GKYCRFSHND QTPSPDKRSR DGRWPPSQNS DDVEKSWNDP KWSESHTSDA AKLSENKNEK 360 LDAPELRLSV RCMEDGWGHN LVENKTHNNP PTNEVVEIDK KEALPLKTEN AGDNSNVSEQ 420 RAPENWLGDM EMSPDWNYRL QPSNHINKGE HASLSSCELQ DGSGRARDTA AIMPPISNET 480 SSIQQGYNLK EIGGSALPHD DGVTGKTAGS YIDISTNALA TQSFNKNGLS SIASPIPNLN 540 AVGHIQEAIL TNPPRGGTMT APQNQTLVQD RKMINIPDIG NVNAPLVNLG IPMAQNMASN 600 EHLTQLTSLS VSLAQFLANG QQLPQLYAAR NSHNDTFANS EGTVKPDSMV TIQPRKQYDP 660 ICDSVEPGKH HVNTNPPDQK LELLSKNLSP SSLSAGLIGG DFNKFHSEQE FIDKSSQLNQ 720 PGPGVSSEVN KENNGVGSEE SNKVQEQDKG AQENGPLENS DGDGKADESK KNKDAKGSRA 780 FKFALVEFVK DLLKPAWKEG QMSKDAYKNI VKKVVDKVTG TMQSASIPTT QEKIEQYLLV 840 SKPKLTKLVQ AYVEKFQKDK *

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MKEGGATSVR MSGSGRKRSS KWDLKEGPRM SFEDVEDNTW PGKAGISFRD KESRRDWLPP  60
EAAGGTRSKW SAMEPLPGRR SSRRDDNIDE DRSRTLKATY EDESYGTRMS PGLDEWRQKS  120
FRNSPKNEYK RTRRSQSRSR SRSRSPVHGF GHERTRSISS VSAQLCKDFV AGRCRRGSHC  180
PFLHQDTQTC EDDWERRPRK ASASKYPISH DSKQYPMGSG RSADCCNEFL KGSCRRGESC  240
RYAHHGASDP SSRGSANDGI RERDNDRRHR YASPERRAER ETRRAADIPC KFFAAGNCRN  300
GKYCRFSHND QTPSPDKRSR DGRWPPSQNS DDVEKSWNDP KWSESHTSDA AKLSENKNEK  360
LDAPELRLSV RCMEDGWGHN LVENKTHNNP PTNEVVEIDK KEALPLKTEN AGDNSNVSEQ  420
RAPENWLGDM EMSPDWNYRL QPSNHINKGE HASLSSCELQ DGSGRARDTA AIMPPISNET  480
SSIQQGYNLK EIGGSALPHD DGVTGKTAGS YIDISTNALA TQSFNKNGLS SIASPIPNLN  540
AVGHIQEAIL TNPPRGGTMT APQNQTLVQD RKMINIPDIG NVNAPLVNLG IPMAQNMASN  600
EHLTQLTSLS VSLAQFLANG QQLPQLYAAR NSHNDTFANS EGTVKPDSMV TIQPRKQYDP  660
ICDSVEPGKH HVNTNPPDQK LELLSKNLSP SSLSAGLIGG DFNKFHSEQE FIDKSSQLNQ  720
PGPGVSSEVN KENNGVGSEE SNKVQEQDKG AQENGPLENS DGDGKADESK KNKDAKGSRA  780
FKFALVEFVK DLLKPAWKEG QMSKDAYKNI VKKVVDKVTG TMQSASIPTT QEKIEQYLLV  840
SKPKLTKLVQ AYVEKFQKDK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G107800.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213493	0.0	AC213493.1 Populus trichocarpa clone POP014-L13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310510.2	0.0	zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBL	B9HEQ3	0.0	B9HEQ3_POPTR; Uncharacterized protein
STRING	POPTR_0007s03970.2	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-18	C3H family protein

Link Out ? help Back to Top
Phytozome	Potri.007G107800.3
Entrez Gene	7477689