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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.007G106100.1 |
Common Name | POPTR_0007s04140g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 349aa MW: 39682.9 Da PI: 9.5072 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.007G106100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.1 | 8.4e-18 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ede+l ++v q+G+ +W+ Ia++++ gR++k+c++rw++
Potri.007G106100.1 19 RGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 64
899*****************************.************96 PP
|
2 | Myb_DNA-binding | 57.4 | 3.4e-18 | 72 | 115 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++T++E+e+l++a++ +G++ W++I+r ++ gRt++ +k++++ +
Potri.007G106100.1 72 RPFTEDEEERLLKAHQIHGNR-WASISRLFP-GRTDNAVKNHYHVV 115
69*******************.*********.***********976 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MEDLKGSSSS DDGKTSCHRG HWRPAEDEKL RQLVDQYGPQ NWNFIAEHLQ GRSGKSCRLR 60 WYNQLDPNIN KRPFTEDEEE RLLKAHQIHG NRWASISRLF PGRTDNAVKN HYHVVMARRK 120 RERCLTFHGK RNNFQVQYST DHHLRSNRNS STPPGSNFGF FRPQVSLDYG SKLGFQNNII 180 ERKGTNIPMT SSNSSPSWTN VSASTITNDS LSFDVFDAKR KDYIQYSSSN SSLHPKERPL 240 ALNESLHCTY HPSSTIYNNY QNVVGQQIPN AKKVDPNNPF ALTSYGDGYG SNKEKITESQ 300 LVRLNSNNHE PAALWKLPMA SQQEEKDHGG QLKNQDVAFI DFLGVGIS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB970783 | 0.0 | AB970783.1 Populus tremula x Populus tremuloides PtxtMYB026 mRNA for MYB transcriptional factor, complete cds. |