PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G094100.1
Common NamePOPTR_0007s05340g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 359aa    MW: 39381.4 Da    PI: 6.3193
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G094100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.3e-07134155223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Potri.007G094100.1 134 FCEICGKGFKRDANLRMHMRAH 155
                         6*******************99 PP
2zf-C2H211.90.00071254270521
                         TTTEEESSHHHHHHHHH CS
             zf-C2H2   5 dCgksFsrksnLkrHir 21 
                          Cg+sFsrk+ L  H+ 
  Potri.007G094100.1 254 SCGTSFSRKDKLFGHMA 270
                         5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-6130156No hitNo description
Gene3DG3DSA:3.30.160.608.9E-6133155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967133160IPR007087Zinc finger, C2H2
PfamPF128740.0019134153No hitNo description
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SMARTSM0035538185218IPR015880Zinc finger, C2H2-like
SMARTSM0035513223245IPR015880Zinc finger, C2H2-like
SMARTSM00355210251275IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSNPGESTRN PTGFSVPISN TDPRVPLLNL SAVRTRMDSL QQFLSESVNN NTLIGKDQMD  60
MVSSEISSAI HEIIVNAAAL LSCNSSSSQP FTPQPPVDST AIKKAQVLKV ENKEEDSEVV  120
ELDAVELLAE HVHFCEICGK GFKRDANLRM HMRAHGNQFK TLEALAKPDK GNETISASFA  180
GKTKFSCPFE GCNRNKKHGK FKPLKSVICV RNHFKRSHCP KMYSCNRCNK KSFSVVTDLK  240
SHLKHCGESR WKCSCGTSFS RKDKLFGHMA LFEGHMPAVA GEEEDSKAKE VGVGGAVDME  300
EDEEEESVVK GDNLGGDCND NEFFEGLLDG FCSMEGYSLQ DVLGSPFSGI EEFSGLRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G094100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310559.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLB9HFF70.0B9HFF7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-76C2H2 family protein