 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.007G067600.1 |
Common Name | POPTR_0007s08190g |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
MYB |
Protein Properties |
Length: 368aa MW: 41250.6 Da PI: 6.0758 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.007G067600.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl
Potri.007G067600.1 16 RGPWSPAEDLRLIAFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
89******************************99************97 PP
|
2 | Myb_DNA-binding | 50.1 | 6.2e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++ E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
Potri.007G067600.1 69 RGNFSEVEEDTIIKLHQTLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
89********************.*********.************986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MGKGRAPCCD KSQVKRGPWS PAEDLRLIAF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFSEVEEDTI IKLHQTLGNK WSKIASHLPG RTDNEIKNVW NTHLKKKLAC 120 KDDGEHSEGD ESKGSSSTSS SSSSSSTIMS SGKRALEMEL DEQKNQGFST QKPRILENEE 180 DSSPRGVSNN QFKPAMKPNE LSSSSFSSNN SSITNSSQAD VSEPDGEKTG SFFNFRGRYN 240 VRNSLEEVNK PEEIVTEIPF ESDYDFWNML DSLSSFQTSG IQLQNVEAGQ SSRFGDAYNM 300 GEVENKKWLR YLENELGLDA TKDENQNLSK NAAESTIVPE NFQHDMPLKP AEVHPGTVEN 360 FHLWPSL*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1h88_C | 5e-25 | 16 | 118 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-25 | 16 | 118 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB970792 | 0.0 | AB970792.1 Populus tremula x Populus tremuloides PtxtMYB192 mRNA for MYB transcriptional factor, complete cds. |