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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.007G050400.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
M-type_MADS |
Protein Properties |
Length: 162aa MW: 19010.2 Da PI: 9.9679 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.007G050400.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 79 | 3.4e-25 | 10 | 55 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
+ien +nr++tf+kR+ g+ KKA+ELS+LCd+e+aviifs+ gkl
Potri.007G050400.1 10 KIENRTNRHITFAKRKSGLVKKAHELSTLCDVEIAVIIFSPAGKLI 55
69******************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 162 aa
Download sequence Send
to blast |
MGRVKLQLRK IENRTNRHIT FAKRKSGLVK KAHELSTLCD VEIAVIIFSP AGKLILFDAK 60 KRPEEIIESY LNLSEKQRGR YEISFQVFNL GDKLRNLLEL QEIENEILLC NFESENIERQ 120 IRDKTLHGLL VMLERKRNMI IYFFHSPFKH SFQLLSPINI D*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6byy_A | 4e-16 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6byy_B | 4e-16 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6byy_C | 4e-16 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6byy_D | 4e-16 | 1 | 80 | 1 | 79 | MEF2 CHIMERA |
6c9l_A | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-16 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
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