 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.007G048900.1 |
| Common Name | POPTR_0007s10490g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB |
| Protein Properties |
Length: 331aa MW: 35750.9 Da PI: 8.4602 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.007G048900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 62.4 | 8.9e-20 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEde l ++v+++G ++W++I++ ++ gR++k+c++rw +
Potri.007G048900.1 12 KGPWSPEEDEALQKLVQKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 57
79******************************.***********985 PP
|
| 2 | Myb_DNA-binding | 50.3 | 5.4e-16 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++T++Ed+ +++a++++G++ W+tIar + gRt++ +k++w++
Potri.007G048900.1 66 PFTPDEDDTIIRAHARFGNK-WATIARLLY-GRTDNAIKNHWNST 108
89******************.********9.***********986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0010200 | Biological Process | response to chitin |
| GO:0046686 | Biological Process | response to cadmium ion |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MAITRKEMDR IKGPWSPEED EALQKLVQKH GARNWSLISK SIPGRSGKSC RLRWCNQLSP 60
QVEHRPFTPD EDDTIIRAHA RFGNKWATIA RLLYGRTDNA IKNHWNSTLK RKCSSMAEDG 120
NFCNREGYDG NLDGDNTQPL KRSVSAGSGV PVSTGLYMSP GSPSGSDVSD SSLPGLSSSY 180
NYNIYRPVAR TGAVMPPVET TSSSDNNNDP PTSLSLSLPG ADSSEVSNQV GEPSQLPKSN 240
TVTPLLTGRN APAQEVSPAV GGLSGSVGFN TEFMSVMQEM IRKEVRNYMM EHSGVGGGMC 300
YQGMSGEGFR NVAVNNRVGL VKLSSEKWTG *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC203076 | 0.0 | AC203076.1 Populus trichocarpa clone Pop1-41F08, complete sequence. |
| GenBank | AC210508 | 0.0 | AC210508.1 Populus trichocarpa clone POP049-N18, complete sequence. |
