PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 182aa MW: 20323.4 Da PI: 8.51

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G046500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.7	2.5e-17	22	71	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Potri.007G046500.1 22 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 71 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.1E-30	21	80	IPR001471	AP2/ERF domain
CDD	cd00018	1.05E-25	22	81	No hit	No description
Pfam	PF00847	7.4E-11	22	71	IPR001471	AP2/ERF domain
SMART	SM00380	4.1E-38	22	85	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-21	22	79	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.155	22	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-11	23	34	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-11	61	81	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MESGVDKDMA TRKRGGMESE RQYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSTPVAAAR 60 AYDTAVFYLR GPSARLNFPE VLAAEGFGGG GSCGDMSAAS IRKRATEVGA HVDAIETALN 120 HHHHHHHHLH HDDRQRNSNN SSSSNDNNET VVDSRELKPR PVDLNKVPDP EDSDGDEWKR 180 S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-14	21	79	4	63	ATERF1
3gcc_A	2e-14	21	79	4	63	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.2983	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G046500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145203	0.0	EF145203.1 Populus trichocarpa clone WS01121_L01 unknown mRNA.
GenBank	EF155947	0.0	EF155947.1 Populus trichocarpa RAP2-like protein (RAP2L6) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310127.2	1e-133	ethylene-responsive transcription factor RAP2-10
Swissprot	Q9FH94	6e-57	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	B9HH96	1e-131	B9HH96_POPTR; ERF family protein
STRING	POPTR_0007s10750.1	1e-132	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1290	32	106
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	1e-47	DREB and EAR motif protein 2

Link Out ? help Back to Top
Phytozome	Potri.007G046500.1
Entrez Gene	7483100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]