PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G043800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 286aa MW: 31018.9 Da PI: 4.5729 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 120.3 | 1.1e-37 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++++++isw+e+g++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF++++F++g+ke Potri.007G043800.1 10 FLTKTYQLVDDPSTDDVISWNETGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFRRGQKE 91 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll +i+r+k+ Potri.007G043800.1 92 LLAEIRRRKT 101 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-39 | 2 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-61 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.6E-35 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.4E-33 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-21 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-21 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-21 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAQRSAPAPF LTKTYQLVDD PSTDDVISWN ETGTTFVVWK TADFAKDLLP NYFKHNNFSS 60 FVRQLNTYGF RKIVPDKWEF ANENFRRGQK ELLAEIRRRK TAAASPTTQT SPAGKSGGAS 120 SSSNSGEDLG STSTSSPDSK NPGSVETAAT QVADLSIENE QLKKDNDVLS SELEQAKKQC 180 GELINFLTEY VKVSPDQINR IIGCGGSTCN GEADVGDNQS EDDDDDENTS DETDHDDTDH 240 DGDGGEGGGL KLFGVLLKCQ NKKKRGRDEK MGLGGARAKE IKICN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-27 | 1 | 104 | 11 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.2848 | 0.0 | bud| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G043800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP014004 | 0.0 | KP014004.1 Populus simonii heat shock transcription factor B1 (HsfB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461200.1 | 0.0 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 1e-108 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A2I4KKJ2 | 0.0 | A0A2I4KKJ2_POPTR; HSF family protein | ||||
STRING | cassava4.1_013185m | 1e-130 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7114 | 32 | 47 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-80 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G043800.1 |
Publications ? help Back to Top | |||
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