PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 208aa MW: 22287.6 Da PI: 7.9417

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G043400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.1e-18	117	166	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp g+ r +lg+f+ ae+Aa+a+++ +++g Potri.007G043400.1 117 KYRGVRQRP-WGKWAAEIRDP---GQGSRLWLGTFDNAEDAARAYDKKNIEFRG 166 8******.******8...435*****************98777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.63	117	174	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-36	117	180	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.77E-22	117	175	IPR016177	DNA-binding domain
Pfam	PF00847	1.1E-11	117	165	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.9E-31	117	175	IPR001471	AP2/ERF domain
CDD	cd00018	2.81E-31	118	174	No hit	No description
PRINTS	PR00367	2.2E-11	118	129	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-11	140	156	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MDASSLNNLV QRRVDEHNAI VSALKHVISG GIDHGSTTGP IEYQNQQQIL AADDGNVGGG 60 SSIIYVSDSE TCPVCKLSTS QCLGCVYFSS STTDQEGGGG GGNASKKKGK GKGRKNKYRG 120 VRQRPWGKWA AEIRDPGQGS RLWLGTFDNA EDAARAYDKK NIEFRGIRAI TNFPRSDYQV 180 QEMEQDKPNT TGEAKNAVGE TSQVGDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	9e-23	118	174	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G043400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216469	0.0	AC216469.1 Populus trichocarpa clone POP036-C22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310145.1	1e-153	ethylene-responsive transcription factor ERF109
Swissprot	O22259	2e-26	ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBL	B9HHG6	1e-152	B9HHG6_POPTR; Uncharacterized protein
STRING	POPTR_0007s11080.1	1e-152	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2962	30	72
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28370.1	1e-24	ERF domain protein 11

Link Out ? help Back to Top
Phytozome	Potri.007G043400.1
Entrez Gene	7483118

Publications ? help Back to Top
Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Eysholdt-Derzsó E,Sauter M Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis. Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108 [PMID:29996004]