PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G038100.1 | ||||||||
Common Name | POPTR_0007s11620g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 324aa MW: 34169 Da PI: 8.8379 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.3e-39 | 62 | 121 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++s Potri.007G038100.1 62 QENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTS 121 7889*****************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 62 | 118 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-32 | 63 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.544 | 65 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 67 | 103 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MIQELLGGAG LIGGERKIPI NATILEGTPS PSPSLSPSPS PSSSTTSAAT TSATNSTPSS 60 AQENLRCPRC DSSNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI GGGCRKNKNT 120 SVSASVGKSG TNKMKTMASD IGRSGFGNGF EHELSSSPIM WASPQNSHIL ALLRATQNPN 180 PSTLSNSIFV KEEGGLIGNQ FISEPGVGTA ALNARTLGLD PISQVPSLGL CSPFWKSNQH 240 QQNGFTVGEA QNSGIQELYQ RLRSSTNYYT DNPSAIVLSN VATSSSTSTS TILESAPVAG 300 GELGYWNPAF SWSDLPTTNG AYP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.13123 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G038100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144749 | 0.0 | EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310753.1 | 0.0 | dof zinc finger protein DOF1.1 isoform X1 | ||||
TrEMBL | A9P9B5 | 0.0 | A9P9B5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11620.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7219 | 32 | 47 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 4e-34 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G038100.1 |
Entrez Gene | 7483138 |
Publications ? help Back to Top | |||
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