PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G032700.1
Common NamePOPTR_0007s12170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 825aa    MW: 89326.9 Da    PI: 7.5546
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G032700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-095916281954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Potri.007G032700.1 591 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 628
                         664459******************************88 PP
2BELL123.49.2e-40451522172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g gsa pYt+lA+ka+SrhFrcLkdaia q+
  Potri.007G032700.1 451 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGSAVPYTALAQKAMSRHFRCLKDAIAAQL 522
                         589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-82383520IPR006563POX domain
PfamPF075266.0E-52388519IPR006563POX domain
PROSITE profilePS5007112.568569632IPR001356Homeobox domain
CDDcd000863.49E-13572633No hitNo description
SMARTSM003892.0E-9572636IPR001356Homeobox domain
SuperFamilySSF466895.56E-17574639IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28575638IPR009057Homeodomain-like
PfamPF059204.2E-18589628IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MGIATTPPFP PILPHSKTHQ LSSPILQNTK SNPSNHNSMS QDYHQGIFSF SNGGFERSSV  60
SHQEHNQQQQ HQQQQHHIAQ QIRRDKLRVQ SGYEQPPPAL LGIEEEESSG LPVYETAGML  120
SEMFNFPPAG GPAAAVELLD QPLRSNYRTQ PRQQQQPVTT NDWYNSNNTQ GMAVGGLGIG  180
NSKNHSNNDS RESLAQHQHQ ISGINADSAT AMQLFLMNPS QPRSPQSPSL SHHQPPPSTS  240
STLHMLLPNP SSSLQGFSTV SGGGFGATSV ISPPQFTWVP DSSHVGGNTG APLSNPTEIS  300
GVVEGQGLSL SLSSSLQHLE AAKAEELRMG DGGLLYYNQG AGGSSSSQYY KNLGGHQHHQ  360
ALHLQGGVGQ NHHQVHAGFG SSLGVVNVLR NSKYVKAAQE LLEEFCSVGR GQFKKSKFGR  420
QNTNPSSNNN PGGGGGSSSS TKDLPPLAAA DRIEHQRRKV KLLSMLDEVD RRYNHYCEQM  480
QMVVNSFDLV MGFGSAVPYT ALAQKAMSRH FRCLKDAIAA QLKLSCELLG EKDGAGTSGI  540
TKGETPRLKL LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS  600
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEDMYQQ ESKEDEPGAE DRERKQANNN  660
SNNSGLAQTP TPTTTTTGSS APAATTTTIP SGKRSEINAN ENDPSLLAIN RQCFSENQTK  720
LSTSSSTTTT TIITPINITS ATEAAPPPHA GQPFHDFADD TCRHGSIVTA DYGTTSSNAN  780
AGGSTLIRFG TTTAGDVSLT LGLRHAGNMP EKSPTFSMRD FGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16578635562Homeobox protein Meis2
3k2a_B4e-16578635562Homeobox protein Meis2
4xrs_A3e-16578635158Homeobox protein Meis1
4xrs_B3e-16578635158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G032700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2277980.0CU227798.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380743.20.0BEL1-like homeodomain protein 4
TrEMBLA0A2K1ZNK10.0A0A2K1ZNK1_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12170.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-163BEL1-like homeodomain 2