PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G030700.1

Common Name

POPTR_0007s12370g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BES1

Protein Properties

Length: 318aa MW: 34089.1 Da PI: 9.3102

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G030700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	221.6	1.6e-68	5	148	1	148
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 g+sgr ptwkErEnnkrRERrRRaiaakiy+GLR qGn+klpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ +e+ag+ +++s + Potri.007G030700.1 5 GSSGRLPTWKERENNKRRERRRRAIAAKIYTGLRTQGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPP-PTEIAGTPTNISAC 94 689***********************************************************************.9********* PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148 ss+q s++ss+++spv+sy+asp+sssfpsps++d +++ + llp+l++ ++++ Potri.007G030700.1 95 SSIQPSPQSSNFPSPVASYHASPTSSSFPSPSRFDGNPS---TYLLPFLRNIASIPT 148 ***********************************88...599999999887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.2E-64	6	130	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MTAGGSSGRL PTWKERENNK RRERRRRAIA AKIYTGLRTQ GNFKLPKHCD NNEVLKALCA 60 EAGWIVEEDG TTYRKGCKPP PTEIAGTPTN ISACSSIQPS PQSSNFPSPV ASYHASPTSS 120 SFPSPSRFDG NPSTYLLPFL RNIASIPTNL PPLRISNSAP VTPPLSSPTS RGSKRKADWE 180 SLSNGTLNSL HHPLLAASAP SSPTRRHHLT PATIPECDES DASTVDSGRW VSFLAGAPHV 240 APPSPTFNLV KPVAQQSGFQ DGVDRHGGLS WGAAAERGRG AEFEFENCRV KPWEGERIHE 300 IGVDDLELTL GGGKARG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	6e-30	9	87	372	450	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	6e-30	9	87	372	450	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	6e-30	9	87	372	450	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	6e-30	9	87	372	450	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.164	0.0	bud\| catkin\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G030700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144216	0.0	EF144216.1 Populus trichocarpa clone PX0011_E05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310201.1	0.0	BES1/BZR1 homolog protein 2
Swissprot	Q94A43	1e-120	BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBL	A9P7X7	0.0	A9P7X7_POPTR; Uncharacterized protein
STRING	POPTR_0007s12370.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1275	34	105
Representative plant	OGRP3719	10	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75080.2	4e-92	BES1 family protein

Link Out ? help Back to Top
Phytozome	Potri.007G030700.1
Entrez Gene	7478010

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]